25 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAF12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa. (213 aa)
	GTF2B	General transcription factor IIB. (310 aa)
	TAF3	TATA-box binding protein associated factor 3. (931 aa)
	GTF2A2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	GTF2F1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (517 aa)
	CK820_G0037203	TAF4 isoform 5. (635 aa)
	GTF2E1	General transcription factor IIE, polypeptide 1, alpha 56kDa. (439 aa)
	TAF11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa. (211 aa)
	TAF13	TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa. (124 aa)
	GTF2E2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	GTF2F2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
	TAF9B	TAF9B isoform 1. (251 aa)
	TAF2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa. (1199 aa)
	TBP	TBP isoform 1. (336 aa)
	TAF4	TATA-box binding protein associated factor 4. (1083 aa)
	TAF10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (218 aa)
	TAF4B	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa. (862 aa)
	TAF6	TATA-box binding protein associated factor 6. (714 aa)
	TAF5	TATA-box binding protein associated factor 5. (803 aa)
	LINC02218	Long intergenic non-protein coding RNA 2218. (198 aa)
	TAF7L	TATA-box binding protein associated factor 7 like. (457 aa)
	TAF9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa. (255 aa)
	TAF8	TATA-box binding protein associated factor 8. (338 aa)
	GTF2A1	General transcription factor IIA, 1, 19/37kDa. (366 aa)
	TAF1	Transcription initiation factor TFIID subunit. (1927 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CK820_G0037203	GTF2A1	ENSPTRP00000023561	ENSPTRP00000089729	TAF4 isoform 5.	General transcription factor IIA, 1, 19/37kDa.	0.944
CK820_G0037203	GTF2A2	ENSPTRP00000023561	ENSPTRP00000012186	TAF4 isoform 5.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.913
CK820_G0037203	GTF2B	ENSPTRP00000023561	ENSPTRP00000001610	TAF4 isoform 5.	General transcription factor IIB.	0.933
CK820_G0037203	GTF2E1	ENSPTRP00000023561	ENSPTRP00000026327	TAF4 isoform 5.	General transcription factor IIE, polypeptide 1, alpha 56kDa.	0.891
CK820_G0037203	GTF2E2	ENSPTRP00000023561	ENSPTRP00000039088	TAF4 isoform 5.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.938
CK820_G0037203	GTF2F1	ENSPTRP00000023561	ENSPTRP00000017625	TAF4 isoform 5.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.911
CK820_G0037203	GTF2F2	ENSPTRP00000023561	ENSPTRP00000040063	TAF4 isoform 5.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.922
CK820_G0037203	LINC02218	ENSPTRP00000023561	ENSPTRP00000066844	TAF4 isoform 5.	Long intergenic non-protein coding RNA 2218.	0.926
CK820_G0037203	TAF1	ENSPTRP00000023561	ENSPTRP00000090345	TAF4 isoform 5.	Transcription initiation factor TFIID subunit.	0.987
CK820_G0037203	TAF10	ENSPTRP00000023561	ENSPTRP00000060099	TAF4 isoform 5.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.988
CK820_G0037203	TAF11	ENSPTRP00000023561	ENSPTRP00000030871	TAF4 isoform 5.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa.	0.987
CK820_G0037203	TAF12	ENSPTRP00000023561	ENSPTRP00000000760	TAF4 isoform 5.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa.	0.991
CK820_G0037203	TAF13	ENSPTRP00000023561	ENSPTRP00000038856	TAF4 isoform 5.	TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa.	0.977
CK820_G0037203	TAF2	ENSPTRP00000023561	ENSPTRP00000053071	TAF4 isoform 5.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa.	0.979
CK820_G0037203	TAF3	ENSPTRP00000023561	ENSPTRP00000003857	TAF4 isoform 5.	TATA-box binding protein associated factor 3.	0.982
CK820_G0037203	TAF4	ENSPTRP00000023561	ENSPTRP00000059890	TAF4 isoform 5.	TATA-box binding protein associated factor 4.	0.542
CK820_G0037203	TAF4B	ENSPTRP00000023561	ENSPTRP00000062534	TAF4 isoform 5.	TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa.	0.814
CK820_G0037203	TAF5	ENSPTRP00000023561	ENSPTRP00000064092	TAF4 isoform 5.	TATA-box binding protein associated factor 5.	0.991
CK820_G0037203	TAF6	ENSPTRP00000023561	ENSPTRP00000063219	TAF4 isoform 5.	TATA-box binding protein associated factor 6.	0.990
CK820_G0037203	TAF7L	ENSPTRP00000023561	ENSPTRP00000080258	TAF4 isoform 5.	TATA-box binding protein associated factor 7 like.	0.975