9 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DNASE2B	Deoxyribonuclease 2 beta. (361 aa)
	EXOG	Endo/exonuclease (5'-3'), endonuclease G-like. (368 aa)
	DFFA	DNA fragmentation factor subunit alpha. (331 aa)
	DICER1	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1922 aa)
	ENDOG	Endonuclease. (297 aa)
	DNASE1L3	Deoxyribonuclease; Belongs to the DNase I family. (305 aa)
	DFFB	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase). (338 aa)
	CECR2	CECR2 isoform 2. (1485 aa)
	DNASE2	Deoxyribonuclease II, lysosomal. (360 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DFFA	DFFB	ENSPTRP00000000259	ENSPTRP00000064348	DNA fragmentation factor subunit alpha.	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	0.999
DFFA	DNASE2	ENSPTRP00000000259	ENSPTRP00000093649	DNA fragmentation factor subunit alpha.	Deoxyribonuclease II, lysosomal.	0.621
DFFA	ENDOG	ENSPTRP00000000259	ENSPTRP00000048830	DNA fragmentation factor subunit alpha.	Endonuclease.	0.581
DFFB	DFFA	ENSPTRP00000064348	ENSPTRP00000000259	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	DNA fragmentation factor subunit alpha.	0.999
DFFB	DNASE2	ENSPTRP00000064348	ENSPTRP00000093649	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	Deoxyribonuclease II, lysosomal.	0.661
DFFB	ENDOG	ENSPTRP00000064348	ENSPTRP00000048830	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	Endonuclease.	0.545
DNASE2	DFFA	ENSPTRP00000093649	ENSPTRP00000000259	Deoxyribonuclease II, lysosomal.	DNA fragmentation factor subunit alpha.	0.621
DNASE2	DFFB	ENSPTRP00000093649	ENSPTRP00000064348	Deoxyribonuclease II, lysosomal.	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	0.661
DNASE2	DNASE2B	ENSPTRP00000093649	ENSPTRP00000001556	Deoxyribonuclease II, lysosomal.	Deoxyribonuclease 2 beta.	0.910
DNASE2B	DNASE2	ENSPTRP00000001556	ENSPTRP00000093649	Deoxyribonuclease 2 beta.	Deoxyribonuclease II, lysosomal.	0.910
ENDOG	DFFA	ENSPTRP00000048830	ENSPTRP00000000259	Endonuclease.	DNA fragmentation factor subunit alpha.	0.581
ENDOG	DFFB	ENSPTRP00000048830	ENSPTRP00000064348	Endonuclease.	DNAation factor, 40kDa, beta polypeptide (Caspase-activated DNase).	0.545