14 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTNNB1	Catenin (Cadherin-associated protein), beta 1, 88kDa. (781 aa)
	AXIN1	AXIN1 isoform 2. (859 aa)
	MDFI	MyoD family inhibitor. (246 aa)
	VAX2	Ventral anterior homeobox 2. (290 aa)
	WNT3	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (355 aa)
	SMAD6	Mothers against decapentaplegic homolog. (496 aa)
	BMPR1A	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (532 aa)
	WNT3-2	Wnt family member 3. (290 aa)
	MDFI-2	MyoD family inhibitor. (246 aa)
	PAX6	PAX6 isoform 13. (436 aa)
	ENSPTRP00000064416	annotation not available (502 aa)
	SMAD2	Mothers against decapentaplegic homolog. (467 aa)
	CXXC4	CXXC4 isoform 2. (366 aa)
	SFRP1	Secreted frizzled-related protein 1. (314 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXIN1	CTNNB1	ENSPTRP00000042391	ENSPTRP00000044466	AXIN1 isoform 2.	Catenin (Cadherin-associated protein), beta 1, 88kDa.	0.999
AXIN1	CXXC4	ENSPTRP00000042391	ENSPTRP00000055473	AXIN1 isoform 2.	CXXC4 isoform 2.	0.469
AXIN1	SFRP1	ENSPTRP00000042391	ENSPTRP00000053182	AXIN1 isoform 2.	Secreted frizzled-related protein 1.	0.575
AXIN1	SMAD2	ENSPTRP00000042391	ENSPTRP00000062376	AXIN1 isoform 2.	Mothers against decapentaplegic homolog.	0.488
AXIN1	WNT3	ENSPTRP00000042391	ENSPTRP00000015851	AXIN1 isoform 2.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.588
AXIN1	WNT3-2	ENSPTRP00000042391	ENSPTRP00000078190	AXIN1 isoform 2.	Wnt family member 3.	0.588
BMPR1A	CTNNB1	ENSPTRP00000004727	ENSPTRP00000044466	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Catenin (Cadherin-associated protein), beta 1, 88kDa.	0.518
BMPR1A	SMAD2	ENSPTRP00000004727	ENSPTRP00000062376	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.959
BMPR1A	SMAD6	ENSPTRP00000004727	ENSPTRP00000012318	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.747
CTNNB1	AXIN1	ENSPTRP00000044466	ENSPTRP00000042391	Catenin (Cadherin-associated protein), beta 1, 88kDa.	AXIN1 isoform 2.	0.999
CTNNB1	BMPR1A	ENSPTRP00000044466	ENSPTRP00000004727	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.518
CTNNB1	CXXC4	ENSPTRP00000044466	ENSPTRP00000055473	Catenin (Cadherin-associated protein), beta 1, 88kDa.	CXXC4 isoform 2.	0.405
CTNNB1	ENSPTRP00000064416	ENSPTRP00000044466	ENSPTRP00000064416	Catenin (Cadherin-associated protein), beta 1, 88kDa.	annotation not available	0.518
CTNNB1	PAX6	ENSPTRP00000044466	ENSPTRP00000065705	Catenin (Cadherin-associated protein), beta 1, 88kDa.	PAX6 isoform 13.	0.469
CTNNB1	SFRP1	ENSPTRP00000044466	ENSPTRP00000053182	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Secreted frizzled-related protein 1.	0.727
CTNNB1	SMAD2	ENSPTRP00000044466	ENSPTRP00000062376	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Mothers against decapentaplegic homolog.	0.938
CTNNB1	SMAD6	ENSPTRP00000044466	ENSPTRP00000012318	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Mothers against decapentaplegic homolog.	0.405
CTNNB1	WNT3	ENSPTRP00000044466	ENSPTRP00000015851	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.689
CTNNB1	WNT3-2	ENSPTRP00000044466	ENSPTRP00000078190	Catenin (Cadherin-associated protein), beta 1, 88kDa.	Wnt family member 3.	0.689
CXXC4	AXIN1	ENSPTRP00000055473	ENSPTRP00000042391	CXXC4 isoform 2.	AXIN1 isoform 2.	0.469