(6 nodes) NEDD8 transferase activity network (Pan troglodytes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RBX1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	UBA3	Ubiquitin-like modifier-activating enzyme 3. (463 aa)
	UBE2M	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	RNF7	Ring finger protein 7. (113 aa)
	ENSPTRP00000084627	annotation not available (178 aa)
	UBE2F	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family. (185 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPTRP00000084627	RBX1	ENSPTRP00000084627	ENSPTRP00000024839	annotation not available	Ring-box 1, E3 ubiquitin protein ligase.	0.886
ENSPTRP00000084627	RNF7	ENSPTRP00000084627	ENSPTRP00000071278	annotation not available	Ring finger protein 7.	0.936
ENSPTRP00000084627	UBA3	ENSPTRP00000084627	ENSPTRP00000043591	annotation not available	Ubiquitin-like modifier-activating enzyme 3.	0.917
ENSPTRP00000084627	UBE2M	ENSPTRP00000084627	ENSPTRP00000048453	annotation not available	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.558
RBX1	ENSPTRP00000084627	ENSPTRP00000024839	ENSPTRP00000084627	Ring-box 1, E3 ubiquitin protein ligase.	annotation not available	0.886
RBX1	RNF7	ENSPTRP00000024839	ENSPTRP00000071278	Ring-box 1, E3 ubiquitin protein ligase.	Ring finger protein 7.	0.849
RBX1	UBA3	ENSPTRP00000024839	ENSPTRP00000043591	Ring-box 1, E3 ubiquitin protein ligase.	Ubiquitin-like modifier-activating enzyme 3.	0.864
RBX1	UBE2F	ENSPTRP00000024839	ENSPTRP00000087042	Ring-box 1, E3 ubiquitin protein ligase.	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.886
RBX1	UBE2M	ENSPTRP00000024839	ENSPTRP00000048453	Ring-box 1, E3 ubiquitin protein ligase.	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.997
RNF7	ENSPTRP00000084627	ENSPTRP00000071278	ENSPTRP00000084627	Ring finger protein 7.	annotation not available	0.936
RNF7	RBX1	ENSPTRP00000071278	ENSPTRP00000024839	Ring finger protein 7.	Ring-box 1, E3 ubiquitin protein ligase.	0.849
RNF7	UBA3	ENSPTRP00000071278	ENSPTRP00000043591	Ring finger protein 7.	Ubiquitin-like modifier-activating enzyme 3.	0.776
RNF7	UBE2F	ENSPTRP00000071278	ENSPTRP00000087042	Ring finger protein 7.	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.936
RNF7	UBE2M	ENSPTRP00000071278	ENSPTRP00000048453	Ring finger protein 7.	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.841
UBA3	ENSPTRP00000084627	ENSPTRP00000043591	ENSPTRP00000084627	Ubiquitin-like modifier-activating enzyme 3.	annotation not available	0.917
UBA3	RBX1	ENSPTRP00000043591	ENSPTRP00000024839	Ubiquitin-like modifier-activating enzyme 3.	Ring-box 1, E3 ubiquitin protein ligase.	0.864
UBA3	RNF7	ENSPTRP00000043591	ENSPTRP00000071278	Ubiquitin-like modifier-activating enzyme 3.	Ring finger protein 7.	0.776
UBA3	UBE2F	ENSPTRP00000043591	ENSPTRP00000087042	Ubiquitin-like modifier-activating enzyme 3.	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.917
UBA3	UBE2M	ENSPTRP00000043591	ENSPTRP00000048453	Ubiquitin-like modifier-activating enzyme 3.	Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.	0.999
UBE2F	RBX1	ENSPTRP00000087042	ENSPTRP00000024839	Ubiquitin conjugating enzyme E2 F (putative); Belongs to the ubiquitin-conjugating enzyme family.	Ring-box 1, E3 ubiquitin protein ligase.	0.886