17 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCP2	DCP2 decapping enzyme homolog. (420 aa)
	ENSPTRP00000090981	annotation not available (244 aa)
	DCPS	Decapping enzyme, scavenger. (337 aa)
	NT5C3B	5'-nucleotidase; Belongs to the pyrimidine 5'-nucleotidase family. (300 aa)
	EXOSC7	Exosome component 7. (291 aa)
	CNOT8	CCR4-NOT transcription complex, subunit 8. (292 aa)
	EXOSC3	Exosome complex exonuclease RRP40. (275 aa)
	EXOSC5	Exosome component 5. (235 aa)
	EXOSC2	Exosome component 2. (293 aa)
	DIS3	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (958 aa)
	EXOSC8	Exosome component 8. (276 aa)
	CK820_G0038659	CNOT7 isoform 10. (245 aa)
	EXOSC9	Exosome component 9. (456 aa)
	CNOT6	CCR4-NOT transcription complex, subunit 6. (557 aa)
	EXOSC2-2	Exosome component 2. (293 aa)
	CNOT7	CCR4-NOT transcription complex, subunit 7. (285 aa)
	ENSPTRP00000091556	annotation not available (277 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CK820_G0038659	CNOT6	ENSPTRP00000061148	ENSPTRP00000069359	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 6.	0.976
CK820_G0038659	CNOT7	ENSPTRP00000061148	ENSPTRP00000078280	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 7.	0.543
CK820_G0038659	CNOT8	ENSPTRP00000061148	ENSPTRP00000029810	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 8.	0.797
CK820_G0038659	DCP2	ENSPTRP00000061148	ENSPTRP00000088791	CNOT7 isoform 10.	DCP2 decapping enzyme homolog.	0.886
CK820_G0038659	ENSPTRP00000090981	ENSPTRP00000061148	ENSPTRP00000090981	CNOT7 isoform 10.	annotation not available	0.547
CK820_G0038659	ENSPTRP00000091556	ENSPTRP00000061148	ENSPTRP00000091556	CNOT7 isoform 10.	annotation not available	0.544
CNOT6	CK820_G0038659	ENSPTRP00000069359	ENSPTRP00000061148	CCR4-NOT transcription complex, subunit 6.	CNOT7 isoform 10.	0.976
CNOT6	CNOT7	ENSPTRP00000069359	ENSPTRP00000078280	CCR4-NOT transcription complex, subunit 6.	CCR4-NOT transcription complex, subunit 7.	0.976
CNOT6	CNOT8	ENSPTRP00000069359	ENSPTRP00000029810	CCR4-NOT transcription complex, subunit 6.	CCR4-NOT transcription complex, subunit 8.	0.978
CNOT6	DCP2	ENSPTRP00000069359	ENSPTRP00000088791	CCR4-NOT transcription complex, subunit 6.	DCP2 decapping enzyme homolog.	0.430
CNOT6	ENSPTRP00000090981	ENSPTRP00000069359	ENSPTRP00000090981	CCR4-NOT transcription complex, subunit 6.	annotation not available	0.976
CNOT6	ENSPTRP00000091556	ENSPTRP00000069359	ENSPTRP00000091556	CCR4-NOT transcription complex, subunit 6.	annotation not available	0.906
CNOT7	CK820_G0038659	ENSPTRP00000078280	ENSPTRP00000061148	CCR4-NOT transcription complex, subunit 7.	CNOT7 isoform 10.	0.543
CNOT7	CNOT6	ENSPTRP00000078280	ENSPTRP00000069359	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 6.	0.976
CNOT7	CNOT8	ENSPTRP00000078280	ENSPTRP00000029810	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 8.	0.955
CNOT7	DCP2	ENSPTRP00000078280	ENSPTRP00000088791	CCR4-NOT transcription complex, subunit 7.	DCP2 decapping enzyme homolog.	0.886
CNOT7	ENSPTRP00000090981	ENSPTRP00000078280	ENSPTRP00000090981	CCR4-NOT transcription complex, subunit 7.	annotation not available	0.544
CNOT7	ENSPTRP00000091556	ENSPTRP00000078280	ENSPTRP00000091556	CCR4-NOT transcription complex, subunit 7.	annotation not available	0.543
CNOT8	CK820_G0038659	ENSPTRP00000029810	ENSPTRP00000061148	CCR4-NOT transcription complex, subunit 8.	CNOT7 isoform 10.	0.797
CNOT8	CNOT6	ENSPTRP00000029810	ENSPTRP00000069359	CCR4-NOT transcription complex, subunit 8.	CCR4-NOT transcription complex, subunit 6.	0.978