38 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLNS1A-2	Chloride nucleotide-sensitive channel 1A. (134 aa)
	ENSPTRP00000093626	annotation not available (450 aa)
	CELF4	CUGBP Elav-like family member 4. (486 aa)
	DAZAP1	DAZAP1 isoform 7. (431 aa)
	ENSPTRP00000078631	annotation not available (389 aa)
	ENSPTRP00000078685	annotation not available (282 aa)
	PRDX6	PRDX6 isoform 1. (224 aa)
	NCBP1	Nuclear cap binding protein subunit 1, 80kDa. (790 aa)
	CIRBP	Cold inducible RNA binding protein. (247 aa)
	NCL	NCL isoform 2. (711 aa)
	TRA2B	Transformer 2 beta homolog. (288 aa)
	TRA2A	Transformer 2 alpha homolog. (282 aa)
	RBM3	RNA binding motif (RNP1, RRM) protein 3. (157 aa)
	SLC39A5	Solute carrier family 39 member 5. (540 aa)
	CELF3	CELF3 isoform 2. (457 aa)
	PRMT5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (620 aa)
	ENSPTRP00000062406	annotation not available (534 aa)
	SNRNP70	Small nuclear ribonucleoprotein U1 subunit 70. (437 aa)
	SNW1	SNW domain containing 1. (571 aa)
	ENSPTRP00000067611	annotation not available (252 aa)
	PRPF19	PRP19/PSO4 pre-mRNA processing factor 19 homolog. (509 aa)
	ENSPTRP00000089678	annotation not available (488 aa)
	ENSPTRP00000068968	annotation not available (60 aa)
	LOC472599	Heat shock cognate 71 kDa protein pseudogene. (400 aa)
	ENSPTRP00000091366	annotation not available (327 aa)
	ENSPTRP00000093174	annotation not available (208 aa)
	HMX2	H6 family homeobox 2. (273 aa)
	NUP98	Nucleoporin 98kDa. (1800 aa)
	CLNS1A	Chloride channel, nucleotide-sensitive, 1A. (237 aa)
	ENSPTRP00000071139	RNA-binding protein Musashi homolog Rbp6-like. (107 aa)
	SF3B4	Splicing factor 3b, subunit 4, 49kDa. (424 aa)
	WDR77	Methylosome protein 50. (342 aa)
	THRAP3	Thyroid hormone receptor associated protein 3. (955 aa)
	ENSPTRP00000072797	annotation not available (191 aa)
	ENSPTRP00000074124	annotation not available (400 aa)
	ENSPTRP00000081714	annotation not available (310 aa)
	HSPA8	Heat shock protein family A (Hsp70) member 8; Belongs to the heat shock protein 70 family. (646 aa)
	RBMX	RNA-binding motif protein, X chromosome, N-terminally processed; RNA-binding protein that plays several role in the regulation of pre- and post-transcriptional processes. Implicated in tissue- specific regulation of gene transcription and alternative splicing of several pre-mRNAs. Binds to and stimulates transcription from the tumor suppressor TXNIP gene promoter; may thus be involved in tumor suppression. When associated with SAFB, binds to and stimulates transcription from the SREBF1 promoter. Associates with nascent mRNAs transcribed by RNA polymerase II. Component of the suprasplic [...] (391 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF3	TRA2B	ENSPTRP00000002208	ENSPTRP00000027026	CELF3 isoform 2.	Transformer 2 beta homolog.	0.415
CIRBP	ENSPTRP00000078685	ENSPTRP00000017326	ENSPTRP00000078685	Cold inducible RNA binding protein.	annotation not available	0.438
CIRBP	ENSPTRP00000091366	ENSPTRP00000017326	ENSPTRP00000091366	Cold inducible RNA binding protein.	annotation not available	0.497
CIRBP	NCBP1	ENSPTRP00000017326	ENSPTRP00000061531	Cold inducible RNA binding protein.	Nuclear cap binding protein subunit 1, 80kDa.	0.445
CIRBP	RBMX	ENSPTRP00000017326	ENSPTRP00000077078	Cold inducible RNA binding protein.	RNA-binding motif protein, X chromosome, N-terminally processed; RNA-binding protein that plays several role in the regulation of pre- and post-transcriptional processes. Implicated in tissue- specific regulation of gene transcription and alternative splicing of several pre-mRNAs. Binds to and stimulates transcription from the tumor suppressor TXNIP gene promoter; may thus be involved in tumor suppression. When associated with SAFB, binds to and stimulates transcription from the SREBF1 promoter. Associates with nascent mRNAs transcribed by RNA polymerase II. Component of the suprasplic [...]	0.621
CIRBP	TRA2A	ENSPTRP00000017326	ENSPTRP00000032448	Cold inducible RNA binding protein.	Transformer 2 alpha homolog.	0.438
CIRBP	TRA2B	ENSPTRP00000017326	ENSPTRP00000027026	Cold inducible RNA binding protein.	Transformer 2 beta homolog.	0.437
CLNS1A	PRMT5	ENSPTRP00000088258	ENSPTRP00000063339	Chloride channel, nucleotide-sensitive, 1A.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.980
CLNS1A	WDR77	ENSPTRP00000088258	ENSPTRP00000001898	Chloride channel, nucleotide-sensitive, 1A.	Methylosome protein 50.	0.978
CLNS1A-2	PRMT5	ENSPTRP00000093239	ENSPTRP00000063339	Chloride nucleotide-sensitive channel 1A.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.980
CLNS1A-2	WDR77	ENSPTRP00000093239	ENSPTRP00000001898	Chloride nucleotide-sensitive channel 1A.	Methylosome protein 50.	0.978
DAZAP1	ENSPTRP00000078685	ENSPTRP00000049161	ENSPTRP00000078685	DAZAP1 isoform 7.	annotation not available	0.473
DAZAP1	TRA2A	ENSPTRP00000049161	ENSPTRP00000032448	DAZAP1 isoform 7.	Transformer 2 alpha homolog.	0.473
DAZAP1	TRA2B	ENSPTRP00000049161	ENSPTRP00000027026	DAZAP1 isoform 7.	Transformer 2 beta homolog.	0.438
ENSPTRP00000062406	NCL	ENSPTRP00000062406	ENSPTRP00000022272	annotation not available	NCL isoform 2.	0.474
ENSPTRP00000062406	PRPF19	ENSPTRP00000062406	ENSPTRP00000089367	annotation not available	PRP19/PSO4 pre-mRNA processing factor 19 homolog.	0.645
ENSPTRP00000067611	NCBP1	ENSPTRP00000067611	ENSPTRP00000061531	annotation not available	Nuclear cap binding protein subunit 1, 80kDa.	0.445
ENSPTRP00000071139	ENSPTRP00000078685	ENSPTRP00000071139	ENSPTRP00000078685	RNA-binding protein Musashi homolog Rbp6-like.	annotation not available	0.497
ENSPTRP00000071139	NCBP1	ENSPTRP00000071139	ENSPTRP00000061531	RNA-binding protein Musashi homolog Rbp6-like.	Nuclear cap binding protein subunit 1, 80kDa.	0.445
ENSPTRP00000071139	TRA2A	ENSPTRP00000071139	ENSPTRP00000032448	RNA-binding protein Musashi homolog Rbp6-like.	Transformer 2 alpha homolog.	0.497