21 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALDH1A2	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family. (518 aa)
	PML	PML isoform 6. (836 aa)
	NR1H2	Nuclear receptor subfamily 1, group H, member 2. (461 aa)
	SP100	Nuclear autoantigen Sp-100. (885 aa)
	TBX1	TBX1 isoform 1. (478 aa)
	RXRB	Retinoid X receptor, beta. (537 aa)
	RXRA	Retinoid X receptor, alpha. (462 aa)
	CRKL	V-crk sarcoma virus CT10 oncogene homolog (Avian)-like. (303 aa)
	RARA	RARA isoform 4. (624 aa)
	SNW1	SNW domain containing 1. (571 aa)
	ENSPTRP00000067778	annotation not available (85 aa)
	PPARG	Peroxisome proliferator-activated receptor gamma isoform X2. (505 aa)
	ACTN4	Actinin, alpha 4. (931 aa)
	CYP26B1	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family. (512 aa)
	RXRG	Retinoid X receptor gamma. (473 aa)
	ENSPTRP00000081714	annotation not available (310 aa)
	RARB	Retinoic acid receptor, beta. (448 aa)
	PTF1A	Pancreas associated transcription factor 1a. (328 aa)
	RARG	Retinoic acid receptor, gamma. (456 aa)
	ESRRG	Estrogen related receptor gamma. (470 aa)
	ENSPTRP00000089450	annotation not available (303 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH1A2	CYP26B1	ENSPTRP00000012165	ENSPTRP00000080569	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family.	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family.	0.970
ALDH1A2	RARA	ENSPTRP00000012165	ENSPTRP00000053041	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family.	RARA isoform 4.	0.490
ALDH1A2	RARB	ENSPTRP00000012165	ENSPTRP00000082886	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family.	Retinoic acid receptor, beta.	0.490
ALDH1A2	RARG	ENSPTRP00000012165	ENSPTRP00000083136	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family.	Retinoic acid receptor, gamma.	0.490
CRKL	TBX1	ENSPTRP00000046677	ENSPTRP00000024223	V-crk sarcoma virus CT10 oncogene homolog (Avian)-like.	TBX1 isoform 1.	0.692
CYP26B1	ALDH1A2	ENSPTRP00000080569	ENSPTRP00000012165	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family.	Aldehyde dehydrogenase 1 family member A2; Belongs to the aldehyde dehydrogenase family.	0.970
CYP26B1	RARA	ENSPTRP00000080569	ENSPTRP00000053041	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family.	RARA isoform 4.	0.510
CYP26B1	RARB	ENSPTRP00000080569	ENSPTRP00000082886	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family.	Retinoic acid receptor, beta.	0.489
CYP26B1	RARG	ENSPTRP00000080569	ENSPTRP00000083136	Cytochrome P450 family 26 subfamily B member 1; Belongs to the cytochrome P450 family.	Retinoic acid receptor, gamma.	0.490
ENSPTRP00000089450	TBX1	ENSPTRP00000089450	ENSPTRP00000024223	annotation not available	TBX1 isoform 1.	0.704
NR1H2	PPARG	ENSPTRP00000019472	ENSPTRP00000076701	Nuclear receptor subfamily 1, group H, member 2.	Peroxisome proliferator-activated receptor gamma isoform X2.	0.419
NR1H2	RXRA	ENSPTRP00000019472	ENSPTRP00000045122	Nuclear receptor subfamily 1, group H, member 2.	Retinoid X receptor, alpha.	0.987
NR1H2	RXRB	ENSPTRP00000019472	ENSPTRP00000030802	Nuclear receptor subfamily 1, group H, member 2.	Retinoid X receptor, beta.	0.964
NR1H2	RXRG	ENSPTRP00000019472	ENSPTRP00000081703	Nuclear receptor subfamily 1, group H, member 2.	Retinoid X receptor gamma.	0.915
PML	RARA	ENSPTRP00000012429	ENSPTRP00000053041	PML isoform 6.	RARA isoform 4.	0.932
PML	RARB	ENSPTRP00000012429	ENSPTRP00000082886	PML isoform 6.	Retinoic acid receptor, beta.	0.415
PML	RARG	ENSPTRP00000012429	ENSPTRP00000083136	PML isoform 6.	Retinoic acid receptor, gamma.	0.415
PML	SP100	ENSPTRP00000012429	ENSPTRP00000022255	PML isoform 6.	Nuclear autoantigen Sp-100.	0.913
PPARG	NR1H2	ENSPTRP00000076701	ENSPTRP00000019472	Peroxisome proliferator-activated receptor gamma isoform X2.	Nuclear receptor subfamily 1, group H, member 2.	0.419
PPARG	RARA	ENSPTRP00000076701	ENSPTRP00000053041	Peroxisome proliferator-activated receptor gamma isoform X2.	RARA isoform 4.	0.655