17 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DPYSL4	Dihydropyrimidinase-like 4. (572 aa)
	FES	Tyrosine-protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. Fes/fps subfamily. (827 aa)
	CRMP1	Collapsin response mediator protein 1. (686 aa)
	SEMA3A	SEMA3A isoform 1; Belongs to the semaphorin family. (771 aa)
	DPYSL2	Dihydropyrimidinase-like 2. (677 aa)
	DPYSL3	Dihydropyrimidinase-like 3. (684 aa)
	FYN	Tyrosine-protein kinase. (537 aa)
	CDK5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (311 aa)
	GSK3B	Glycogen synthase kinase 3 beta; Belongs to the protein kinase superfamily. (481 aa)
	SEMA3B	SEMA3B isoform 2; Belongs to the semaphorin family. (749 aa)
	PLXNA1	PLXNA1 isoform 1. (1915 aa)
	CDK5R1	Cyclin-dependent kinase 5 activator. (307 aa)
	DPYSL5	DPYSL5 isoform 1. (565 aa)
	PLXNA3	PLXNA3 isoform 1. (1871 aa)
	PLXNA4	PLXNA4 isoform 1. (1894 aa)
	PLXNA2	PLXNA2 isoform 1. (1909 aa)
	NRP1	Neuropilin; Belongs to the neuropilin family. (923 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK5	CDK5R1	ENSPTRP00000080245	ENSPTRP00000052992	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Cyclin-dependent kinase 5 activator.	0.999
CDK5	CRMP1	ENSPTRP00000080245	ENSPTRP00000069435	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Collapsin response mediator protein 1.	0.643
CDK5	DPYSL2	ENSPTRP00000080245	ENSPTRP00000069559	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Dihydropyrimidinase-like 2.	0.752
CDK5	DPYSL3	ENSPTRP00000080245	ENSPTRP00000073840	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Dihydropyrimidinase-like 3.	0.582
CDK5	DPYSL4	ENSPTRP00000080245	ENSPTRP00000005402	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Dihydropyrimidinase-like 4.	0.553
CDK5	DPYSL5	ENSPTRP00000080245	ENSPTRP00000052106	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	DPYSL5 isoform 1.	0.511
CDK5	FYN	ENSPTRP00000080245	ENSPTRP00000077482	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Tyrosine-protein kinase.	0.609
CDK5	GSK3B	ENSPTRP00000080245	ENSPTRP00000081705	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Glycogen synthase kinase 3 beta; Belongs to the protein kinase superfamily.	0.500
CDK5	NRP1	ENSPTRP00000080245	ENSPTRP00000004113	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	Neuropilin; Belongs to the neuropilin family.	0.637
CDK5	PLXNA1	ENSPTRP00000080245	ENSPTRP00000088978	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	PLXNA1 isoform 1.	0.447
CDK5	PLXNA2	ENSPTRP00000080245	ENSPTRP00000003263	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	PLXNA2 isoform 1.	0.643
CDK5	PLXNA3	ENSPTRP00000080245	ENSPTRP00000038678	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	PLXNA3 isoform 1.	0.428
CDK5	PLXNA4	ENSPTRP00000080245	ENSPTRP00000059933	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	PLXNA4 isoform 1.	0.428
CDK5	SEMA3A	ENSPTRP00000080245	ENSPTRP00000033105	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	SEMA3A isoform 1; Belongs to the semaphorin family.	0.633
CDK5	SEMA3B	ENSPTRP00000080245	ENSPTRP00000086418	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	SEMA3B isoform 2; Belongs to the semaphorin family.	0.542
CDK5R1	CDK5	ENSPTRP00000052992	ENSPTRP00000080245	Cyclin-dependent kinase 5 activator.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.999
CDK5R1	CRMP1	ENSPTRP00000052992	ENSPTRP00000069435	Cyclin-dependent kinase 5 activator.	Collapsin response mediator protein 1.	0.443
CDK5R1	DPYSL2	ENSPTRP00000052992	ENSPTRP00000069559	Cyclin-dependent kinase 5 activator.	Dihydropyrimidinase-like 2.	0.408
CDK5R1	DPYSL4	ENSPTRP00000052992	ENSPTRP00000005402	Cyclin-dependent kinase 5 activator.	Dihydropyrimidinase-like 4.	0.457
CDK5R1	GSK3B	ENSPTRP00000052992	ENSPTRP00000081705	Cyclin-dependent kinase 5 activator.	Glycogen synthase kinase 3 beta; Belongs to the protein kinase superfamily.	0.484