31 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BBS1	Bardet-Biedl syndrome 1 protein isoform X1. (593 aa)
	RAB3IP	T0146196 isoform 1. (395 aa)
	BBS10	Bardet-Biedl syndrome 10. (723 aa)
	BBS2	Bardet-Biedl syndrome 2 protein homolog. (721 aa)
	CCT4	T-complex protein 1 subunit delta. (544 aa)
	BBS5	T0004560 isoform 1. (341 aa)
	MKKS	McKusick-Kaufman syndrome. (570 aa)
	MCHR1	Melanin-concentrating hormone receptor 1; Receptor for melanin-concentrating hormone, coupled to both G proteins that inhibit adenylyl cyclase and G proteins that activate phosphoinositide hydrolysis. (422 aa)
	LZTFL1	Leucine zipper transcription factor-like 1. (299 aa)
	BBS7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (715 aa)
	BBS12	BBS12 isoform 1. (710 aa)
	CCT5	Chaperonin containing TCP1, subunit 5 (Epsilon). (541 aa)
	TCP1	T-complex protein 1 subunit alpha. (556 aa)
	SMO	SMO isoform 1; Belongs to the G-protein coupled receptor Fz/Smo family. (786 aa)
	CCT8L2	LOW QUALITY PROTEIN: putative T-complex protein 1 subunit theta-like 1. (557 aa)
	CCT3	T-complex protein 1 subunit gamma. (545 aa)
	BBS4	Bardet-Biedl syndrome 4. (519 aa)
	ENSPTRP00000061551	annotation not available (394 aa)
	ENSPTRP00000064921	annotation not available (544 aa)
	TTC8	Tetratricopeptide repeat domain 8. (531 aa)
	SMO-2	Smoothened, frizzled class receptor. (786 aa)
	SSTR3	Somatostatin receptor 3; Belongs to the G-protein coupled receptor 1 family. (418 aa)
	ENSPTRP00000075146	annotation not available (457 aa)
	ARL6	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family. (203 aa)
	CCT2	Chaperonin containing TCP1, subunit 2 (Beta). (535 aa)
	LOC743586	T-complex protein 1 subunit alpha pseudogene. (338 aa)
	ENSPTRP00000077287	annotation not available (417 aa)
	BBS9	Bardet-Biedl syndrome 9. (887 aa)
	CCT8	Chaperonin containing TCP1, subunit 8 (Theta). (548 aa)
	CCT8L2-2	T-complex protein 1 subunit theta-like 2. (557 aa)
	ENSPTRP00000093266	annotation not available (417 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6	BBS1	ENSPTRP00000076103	ENSPTRP00000006768	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Bardet-Biedl syndrome 1 protein isoform X1.	0.817
ARL6	BBS2	ENSPTRP00000076103	ENSPTRP00000013880	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Bardet-Biedl syndrome 2 protein homolog.	0.575
ARL6	BBS4	ENSPTRP00000076103	ENSPTRP00000057396	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Bardet-Biedl syndrome 4.	0.572
ARL6	BBS5	ENSPTRP00000076103	ENSPTRP00000021547	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	T0004560 isoform 1.	0.569
ARL6	BBS7	ENSPTRP00000076103	ENSPTRP00000028183	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.667
ARL6	BBS9	ENSPTRP00000076103	ENSPTRP00000084776	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Bardet-Biedl syndrome 9.	0.582
ARL6	LZTFL1	ENSPTRP00000076103	ENSPTRP00000025586	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Leucine zipper transcription factor-like 1.	0.452
ARL6	RAB3IP	ENSPTRP00000076103	ENSPTRP00000008855	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	T0146196 isoform 1.	0.415
ARL6	TTC8	ENSPTRP00000076103	ENSPTRP00000066504	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Tetratricopeptide repeat domain 8.	0.673
BBS1	ARL6	ENSPTRP00000006768	ENSPTRP00000076103	Bardet-Biedl syndrome 1 protein isoform X1.	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	0.817
BBS1	BBS10	ENSPTRP00000006768	ENSPTRP00000008903	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 10.	0.862
BBS1	BBS12	ENSPTRP00000006768	ENSPTRP00000028195	Bardet-Biedl syndrome 1 protein isoform X1.	BBS12 isoform 1.	0.750
BBS1	BBS2	ENSPTRP00000006768	ENSPTRP00000013880	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS1	BBS4	ENSPTRP00000006768	ENSPTRP00000057396	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 4.	0.999
BBS1	BBS5	ENSPTRP00000006768	ENSPTRP00000021547	Bardet-Biedl syndrome 1 protein isoform X1.	T0004560 isoform 1.	0.999
BBS1	BBS7	ENSPTRP00000006768	ENSPTRP00000028183	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
BBS1	BBS9	ENSPTRP00000006768	ENSPTRP00000084776	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 9.	0.999
BBS1	LZTFL1	ENSPTRP00000006768	ENSPTRP00000025586	Bardet-Biedl syndrome 1 protein isoform X1.	Leucine zipper transcription factor-like 1.	0.929
BBS1	MCHR1	ENSPTRP00000006768	ENSPTRP00000024831	Bardet-Biedl syndrome 1 protein isoform X1.	Melanin-concentrating hormone receptor 1; Receptor for melanin-concentrating hormone, coupled to both G proteins that inhibit adenylyl cyclase and G proteins that activate phosphoinositide hydrolysis.	0.792
BBS1	MKKS	ENSPTRP00000006768	ENSPTRP00000022725	Bardet-Biedl syndrome 1 protein isoform X1.	McKusick-Kaufman syndrome.	0.421