(8 nodes) Copper amine oxidase, N2 domain network (Pan troglodytes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107969159	Membrane primary amine oxidase-like. (753 aa)
	AOC3	Amine oxidase. (763 aa)
	ENSPTRP00000073519	annotation not available (781 aa)
	ENSPTRP00000073607	annotation not available (757 aa)
	AOC1	Amine oxidase. (755 aa)
	AOC2	Amine oxidase copper containing 2. (756 aa)
	ENSPTRP00000076076	annotation not available (755 aa)
	AOC2-2	Amine oxidase. (756 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOC1	ENSPTRP00000076076	ENSPTRP00000044191	ENSPTRP00000076076	Amine oxidase.	annotation not available	0.900
AOC2-2	AOC3	ENSPTRP00000072637	ENSPTRP00000053082	Amine oxidase.	Amine oxidase.	0.910
AOC2-2	LOC107969159	ENSPTRP00000072637	ENSPTRP00000061154	Amine oxidase.	Membrane primary amine oxidase-like.	0.907
AOC3	AOC2-2	ENSPTRP00000053082	ENSPTRP00000072637	Amine oxidase.	Amine oxidase.	0.910
AOC3	LOC107969159	ENSPTRP00000053082	ENSPTRP00000061154	Amine oxidase.	Membrane primary amine oxidase-like.	0.900
ENSPTRP00000076076	AOC1	ENSPTRP00000076076	ENSPTRP00000044191	annotation not available	Amine oxidase.	0.900
LOC107969159	AOC2-2	ENSPTRP00000061154	ENSPTRP00000072637	Membrane primary amine oxidase-like.	Amine oxidase.	0.907
LOC107969159	AOC3	ENSPTRP00000061154	ENSPTRP00000053082	Membrane primary amine oxidase-like.	Amine oxidase.	0.900