6 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BBS4	Bardet-Biedl syndrome 4. (519 aa)
	BBS1	Bardet-Biedl syndrome 1 protein isoform X1. (593 aa)
	BBS10	Bardet-Biedl syndrome 10. (723 aa)
	BBS2	Bardet-Biedl syndrome 2 protein homolog. (721 aa)
	BBS5	T0004560 isoform 1. (341 aa)
	TRIM32	Tripartite motif-containing 32. (653 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS1	BBS10	ENSPTRP00000006768	ENSPTRP00000008903	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 10.	0.862
BBS1	BBS2	ENSPTRP00000006768	ENSPTRP00000013880	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS1	BBS4	ENSPTRP00000006768	ENSPTRP00000057396	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 4.	0.999
BBS1	BBS5	ENSPTRP00000006768	ENSPTRP00000021547	Bardet-Biedl syndrome 1 protein isoform X1.	T0004560 isoform 1.	0.999
BBS1	TRIM32	ENSPTRP00000006768	ENSPTRP00000036397	Bardet-Biedl syndrome 1 protein isoform X1.	Tripartite motif-containing 32.	0.601
BBS10	BBS1	ENSPTRP00000008903	ENSPTRP00000006768	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 1 protein isoform X1.	0.862
BBS10	BBS2	ENSPTRP00000008903	ENSPTRP00000013880	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 2 protein homolog.	0.914
BBS10	BBS4	ENSPTRP00000008903	ENSPTRP00000057396	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 4.	0.836
BBS10	BBS5	ENSPTRP00000008903	ENSPTRP00000021547	Bardet-Biedl syndrome 10.	T0004560 isoform 1.	0.856
BBS10	TRIM32	ENSPTRP00000008903	ENSPTRP00000036397	Bardet-Biedl syndrome 10.	Tripartite motif-containing 32.	0.630
BBS2	BBS1	ENSPTRP00000013880	ENSPTRP00000006768	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 1 protein isoform X1.	0.999
BBS2	BBS10	ENSPTRP00000013880	ENSPTRP00000008903	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 10.	0.914
BBS2	BBS4	ENSPTRP00000013880	ENSPTRP00000057396	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 4.	0.999
BBS2	BBS5	ENSPTRP00000013880	ENSPTRP00000021547	Bardet-Biedl syndrome 2 protein homolog.	T0004560 isoform 1.	0.999
BBS2	TRIM32	ENSPTRP00000013880	ENSPTRP00000036397	Bardet-Biedl syndrome 2 protein homolog.	Tripartite motif-containing 32.	0.608
BBS4	BBS1	ENSPTRP00000057396	ENSPTRP00000006768	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 1 protein isoform X1.	0.999
BBS4	BBS10	ENSPTRP00000057396	ENSPTRP00000008903	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 10.	0.836
BBS4	BBS2	ENSPTRP00000057396	ENSPTRP00000013880	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS4	BBS5	ENSPTRP00000057396	ENSPTRP00000021547	Bardet-Biedl syndrome 4.	T0004560 isoform 1.	0.999
BBS4	TRIM32	ENSPTRP00000057396	ENSPTRP00000036397	Bardet-Biedl syndrome 4.	Tripartite motif-containing 32.	0.559