11 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXP4	FOXP4 isoform 3. (668 aa)
	PROX1	Prospero homeobox 1. (737 aa)
	TBX2	T-box transcription factor 2. (712 aa)
	BMP4	Bone morphogenetic protein 4. (408 aa)
	SERPINH1	Serpin peptidase inhibitor, clade H (Heat shock protein 47), member 1, (Collagen binding protein 1); Belongs to the serpin family. (418 aa)
	NEUROD2	Neurogenic differentiation factor. (382 aa)
	FOXP4-2	Forkhead box P4. (668 aa)
	STOM	STOM isoform 3. (288 aa)
	BMP4-2	Bone morphogenetic protein 4. (408 aa)
	RNF141	Ring finger protein 141. (247 aa)
	UNCX	UNCX isoform 1. (531 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	TBX2	ENSPTRP00000010780	ENSPTRP00000016104	Bone morphogenetic protein 4.	T-box transcription factor 2.	0.427
BMP4-2	TBX2	ENSPTRP00000080656	ENSPTRP00000016104	Bone morphogenetic protein 4.	T-box transcription factor 2.	0.427
FOXP4	UNCX	ENSPTRP00000063013	ENSPTRP00000064731	FOXP4 isoform 3.	UNCX isoform 1.	0.405
FOXP4-2	UNCX	ENSPTRP00000086765	ENSPTRP00000064731	Forkhead box P4.	UNCX isoform 1.	0.405
PROX1	RNF141	ENSPTRP00000051173	ENSPTRP00000070811	Prospero homeobox 1.	Ring finger protein 141.	0.438
PROX1	SERPINH1	ENSPTRP00000051173	ENSPTRP00000007020	Prospero homeobox 1.	Serpin peptidase inhibitor, clade H (Heat shock protein 47), member 1, (Collagen binding protein 1); Belongs to the serpin family.	0.612
PROX1	TBX2	ENSPTRP00000051173	ENSPTRP00000016104	Prospero homeobox 1.	T-box transcription factor 2.	0.484
PROX1	UNCX	ENSPTRP00000051173	ENSPTRP00000064731	Prospero homeobox 1.	UNCX isoform 1.	0.524
RNF141	PROX1	ENSPTRP00000070811	ENSPTRP00000051173	Ring finger protein 141.	Prospero homeobox 1.	0.438
RNF141	STOM	ENSPTRP00000070811	ENSPTRP00000083351	Ring finger protein 141.	STOM isoform 3.	0.746
RNF141	UNCX	ENSPTRP00000070811	ENSPTRP00000064731	Ring finger protein 141.	UNCX isoform 1.	0.488
SERPINH1	PROX1	ENSPTRP00000007020	ENSPTRP00000051173	Serpin peptidase inhibitor, clade H (Heat shock protein 47), member 1, (Collagen binding protein 1); Belongs to the serpin family.	Prospero homeobox 1.	0.612
SERPINH1	UNCX	ENSPTRP00000007020	ENSPTRP00000064731	Serpin peptidase inhibitor, clade H (Heat shock protein 47), member 1, (Collagen binding protein 1); Belongs to the serpin family.	UNCX isoform 1.	0.456
STOM	RNF141	ENSPTRP00000083351	ENSPTRP00000070811	STOM isoform 3.	Ring finger protein 141.	0.746
TBX2	BMP4	ENSPTRP00000016104	ENSPTRP00000010780	T-box transcription factor 2.	Bone morphogenetic protein 4.	0.427
TBX2	BMP4-2	ENSPTRP00000016104	ENSPTRP00000080656	T-box transcription factor 2.	Bone morphogenetic protein 4.	0.427
TBX2	PROX1	ENSPTRP00000016104	ENSPTRP00000051173	T-box transcription factor 2.	Prospero homeobox 1.	0.484
TBX2	UNCX	ENSPTRP00000016104	ENSPTRP00000064731	T-box transcription factor 2.	UNCX isoform 1.	0.517
UNCX	FOXP4	ENSPTRP00000064731	ENSPTRP00000063013	UNCX isoform 1.	FOXP4 isoform 3.	0.405
UNCX	FOXP4-2	ENSPTRP00000064731	ENSPTRP00000086765	UNCX isoform 1.	Forkhead box P4.	0.405