(12 nodes) Mostly uncharacterized, incl. TROVE domain, and CENP-B N-terminal DNA-binding domain network (Canis lupus familiaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZC3H12D	Zinc finger CCCH-type containing 12D. (163 aa)
	ZC3HAV1L	Zinc finger CCCH-type containing, antiviral 1 like. (162 aa)
	TRIM21	Tripartite motif containing 21. (469 aa)
	RABGAP1	RAB GTPase activating protein 1. (1055 aa)
	ZRANB2	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family. (311 aa)
	ZC3H12B	Zinc finger CCCH-type containing 12B. (836 aa)
	CENPB	Centromere protein B. (615 aa)
	LARP4B	La ribonucleoprotein domain family member 4B. (724 aa)
	RO60	Ro60, Y RNA binding protein. (557 aa)
	MOV10	Mov10 RISC complex RNA helicase. (1103 aa)
	SHISA5	Shisa family member 5. (211 aa)
	RC3H2	Ring finger and CCCH-type domains 2. (1191 aa)

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CENPB	RO60	ENSCAFP00000048030	ENSCAFP00000049280	Centromere protein B.	Ro60, Y RNA binding protein.	0.735
LARP4B	MOV10	ENSCAFP00000048236	ENSCAFP00000050374	La ribonucleoprotein domain family member 4B.	Mov10 RISC complex RNA helicase.	0.506
LARP4B	ZC3H12B	ENSCAFP00000048236	ENSCAFP00000042022	La ribonucleoprotein domain family member 4B.	Zinc finger CCCH-type containing 12B.	0.787
LARP4B	ZRANB2	ENSCAFP00000048236	ENSCAFP00000030276	La ribonucleoprotein domain family member 4B.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.719
MOV10	LARP4B	ENSCAFP00000050374	ENSCAFP00000048236	Mov10 RISC complex RNA helicase.	La ribonucleoprotein domain family member 4B.	0.506
MOV10	SHISA5	ENSCAFP00000050374	ENSCAFP00000060742	Mov10 RISC complex RNA helicase.	Shisa family member 5.	0.565
MOV10	ZRANB2	ENSCAFP00000050374	ENSCAFP00000030276	Mov10 RISC complex RNA helicase.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.522
RABGAP1	RC3H2	ENSCAFP00000030028	ENSCAFP00000064860	RAB GTPase activating protein 1.	Ring finger and CCCH-type domains 2.	0.881
RC3H2	RABGAP1	ENSCAFP00000064860	ENSCAFP00000030028	Ring finger and CCCH-type domains 2.	RAB GTPase activating protein 1.	0.881
RC3H2	ZC3H12B	ENSCAFP00000064860	ENSCAFP00000042022	Ring finger and CCCH-type domains 2.	Zinc finger CCCH-type containing 12B.	0.466
RC3H2	ZC3HAV1L	ENSCAFP00000064860	ENSCAFP00000006073	Ring finger and CCCH-type domains 2.	Zinc finger CCCH-type containing, antiviral 1 like.	0.504
RO60	CENPB	ENSCAFP00000049280	ENSCAFP00000048030	Ro60, Y RNA binding protein.	Centromere protein B.	0.735
RO60	TRIM21	ENSCAFP00000049280	ENSCAFP00000009023	Ro60, Y RNA binding protein.	Tripartite motif containing 21.	0.939
SHISA5	MOV10	ENSCAFP00000060742	ENSCAFP00000050374	Shisa family member 5.	Mov10 RISC complex RNA helicase.	0.565
SHISA5	TRIM21	ENSCAFP00000060742	ENSCAFP00000009023	Shisa family member 5.	Tripartite motif containing 21.	0.509
TRIM21	RO60	ENSCAFP00000009023	ENSCAFP00000049280	Tripartite motif containing 21.	Ro60, Y RNA binding protein.	0.939
TRIM21	SHISA5	ENSCAFP00000009023	ENSCAFP00000060742	Tripartite motif containing 21.	Shisa family member 5.	0.509
ZC3H12B	LARP4B	ENSCAFP00000042022	ENSCAFP00000048236	Zinc finger CCCH-type containing 12B.	La ribonucleoprotein domain family member 4B.	0.787
ZC3H12B	RC3H2	ENSCAFP00000042022	ENSCAFP00000064860	Zinc finger CCCH-type containing 12B.	Ring finger and CCCH-type domains 2.	0.466
ZC3H12B	ZC3HAV1L	ENSCAFP00000042022	ENSCAFP00000006073	Zinc finger CCCH-type containing 12B.	Zinc finger CCCH-type containing, antiviral 1 like.	0.532