(5 nodes) CRD-mediated mRNA stability complex network (Canis lupus familiaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IGF2BP1	Insulin like growth factor 2 mRNA binding protein 1. (577 aa)
	CSDE1	Cold shock domain containing E1. (844 aa)
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (805 aa)
	SYNCRIP	Synaptotagmin binding cytoplasmic RNA interacting protein. (562 aa)
	DHX9	DExH-box helicase 9. (1276 aa)

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	HNRNPU	ENSCAFP00000060528	ENSCAFP00000023283	Cold shock domain containing E1.	Heterogeneous nuclear ribonucleoprotein U.	0.525
DHX9	HNRNPU	ENSCAFP00000019476	ENSCAFP00000023283	DExH-box helicase 9.	Heterogeneous nuclear ribonucleoprotein U.	0.803
DHX9	SYNCRIP	ENSCAFP00000019476	ENSCAFP00000004514	DExH-box helicase 9.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.750
HNRNPU	CSDE1	ENSCAFP00000023283	ENSCAFP00000060528	Heterogeneous nuclear ribonucleoprotein U.	Cold shock domain containing E1.	0.525
HNRNPU	DHX9	ENSCAFP00000023283	ENSCAFP00000019476	Heterogeneous nuclear ribonucleoprotein U.	DExH-box helicase 9.	0.803
HNRNPU	SYNCRIP	ENSCAFP00000023283	ENSCAFP00000004514	Heterogeneous nuclear ribonucleoprotein U.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.857
IGF2BP1	SYNCRIP	ENSCAFP00000024866	ENSCAFP00000004514	Insulin like growth factor 2 mRNA binding protein 1.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.427
SYNCRIP	DHX9	ENSCAFP00000004514	ENSCAFP00000019476	Synaptotagmin binding cytoplasmic RNA interacting protein.	DExH-box helicase 9.	0.750
SYNCRIP	HNRNPU	ENSCAFP00000004514	ENSCAFP00000023283	Synaptotagmin binding cytoplasmic RNA interacting protein.	Heterogeneous nuclear ribonucleoprotein U.	0.857
SYNCRIP	IGF2BP1	ENSCAFP00000004514	ENSCAFP00000024866	Synaptotagmin binding cytoplasmic RNA interacting protein.	Insulin like growth factor 2 mRNA binding protein 1.	0.427