STRINGSTRING
SART1 SART1 LSM3-4 LSM3-4 LSM3-3 LSM3-3 LSM3-2 LSM3-2 BUD13 BUD13 CWC22 CWC22 J9P8E9_CANLF J9P8E9_CANLF LOC100686524 LOC100686524 SF3A2 SF3A2 ENSCAFP00000038104 ENSCAFP00000038104 SF3B5 SF3B5 SNRPB2 SNRPB2 SF3B3 SF3B3 LSM2 LSM2 ENSCAFP00000065931 ENSCAFP00000065931 SNRNP200 SNRNP200 ENSCAFP00000062765 ENSCAFP00000062765 LSM4-2 LSM4-2 LSM3-5 LSM3-5 SNU13 SNU13 ENSCAFP00000057917 ENSCAFP00000057917 ENSCAFP00000057191 ENSCAFP00000057191 PRPF6 PRPF6 ENSCAFP00000051873 ENSCAFP00000051873 LSM8 LSM8 SRRM2 SRRM2 LSM3 LSM3 LSM8-2 LSM8-2 LSM7 LSM7 PRPF8 PRPF8 SNRPB SNRPB LOC100685900 LOC100685900 LSM4 LSM4 EFTUD2 EFTUD2 MFAP1 MFAP1 SF3B2 SF3B2 SF3A1 SF3A1 PRPF3 PRPF3 SF3B1 SF3B1 SNRPA1 SNRPA1 CWC27 CWC27 ZMAT2 ZMAT2 IK IK WBP4 WBP4 SNRPD2 SNRPD2 PRPF38A PRPF38A SNIP1 SNIP1 PRPF4 PRPF4 SF3A3 SF3A3 PRPF31 PRPF31 SMU1 SMU1 PHF5A PHF5A SNRPD2-2 SNRPD2-2 DHX16 DHX16 TXNL4A TXNL4A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (784 aa)
LSM3-4U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (107 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
BUD13BUD13 homolog. (726 aa)
CWC22CWC22 spliceosome associated protein homolog. (908 aa)
J9P8E9_CANLFRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC100686524Uncharacterized protein. (178 aa)
SF3A2Splicing factor 3a subunit 2. (478 aa)
ENSCAFP00000038104annotation not available (501 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SNRPB2Uncharacterized protein. (225 aa)
SF3B3Splicing factor 3b subunit 3. (1217 aa)
LSM2Sm domain-containing protein. (311 aa)
ENSCAFP00000065931Uncharacterized protein. (85 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
ENSCAFP00000062765RRM domain-containing protein. (88 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
LSM3-5U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (163 aa)
ENSCAFP00000057917Sm domain-containing protein. (81 aa)
ENSCAFP00000057191Uncharacterized protein. (53 aa)
PRPF6Pre-mRNA processing factor 6. (971 aa)
ENSCAFP00000051873Uncharacterized protein. (199 aa)
LSM8LSM8 homolog, U6 small nuclear RNA associated. (96 aa)
SRRM2Serine/arginine repetitive matrix 2. (2906 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LSM8-2U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (135 aa)
LSM7Sm domain-containing protein. (103 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (231 aa)
LOC100685900U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (1009 aa)
MFAP1Microfibril associated protein 1. (439 aa)
SF3B2Splicing factor 3b subunit 2. (895 aa)
SF3A1Splicing factor 3a subunit 1. (793 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
SF3B1Splicing factor 3b subunit 1. (1429 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
CWC27CWC27 spliceosome associated cyclophilin. (472 aa)
ZMAT2Zinc finger matrin-type 2. (199 aa)
IKIK cytokine. (547 aa)
WBP4WW domain binding protein 4. (371 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
SNIP1Smad nuclear interacting protein 1. (397 aa)
PRPF4Pre-mRNA processing factor 4. (522 aa)
SF3A3Matrin-type domain-containing protein. (501 aa)
PRPF31Nop domain-containing protein. (499 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
PHF5APHD finger protein 5A. (110 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (155 aa)
DHX16DEAH-box helicase 16. (1042 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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