(6 nodes) Mixed, incl. Cranial nerve maturation, and Transforming growth factor beta1 production network (Vulpes vulpes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CASS4	Cas scaffolding protein family member 4. (809 aa)
	ABCA7	ATP-binding cassette sub-family A member 7. (2042 aa)
	RIN3	Ras and Rab interactor 3. (923 aa)
	SLC24A4	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (616 aa)
	TREML2	Trem-like transcript 2 protein. (347 aa)
	CD2AP	CD2-associated protein. (592 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA7	CASS4	ENSVVUP00000031339	ENSVVUP00000023671	ATP-binding cassette sub-family A member 7.	Cas scaffolding protein family member 4.	0.518
ABCA7	CD2AP	ENSVVUP00000031339	ENSVVUP00000041192	ATP-binding cassette sub-family A member 7.	CD2-associated protein.	0.505
ABCA7	SLC24A4	ENSVVUP00000031339	ENSVVUP00000034096	ATP-binding cassette sub-family A member 7.	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.622
CASS4	ABCA7	ENSVVUP00000023671	ENSVVUP00000031339	Cas scaffolding protein family member 4.	ATP-binding cassette sub-family A member 7.	0.518
CASS4	CD2AP	ENSVVUP00000023671	ENSVVUP00000041192	Cas scaffolding protein family member 4.	CD2-associated protein.	0.552
CASS4	RIN3	ENSVVUP00000023671	ENSVVUP00000034090	Cas scaffolding protein family member 4.	Ras and Rab interactor 3.	0.524
CASS4	SLC24A4	ENSVVUP00000023671	ENSVVUP00000034096	Cas scaffolding protein family member 4.	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.475
CASS4	TREML2	ENSVVUP00000023671	ENSVVUP00000037254	Cas scaffolding protein family member 4.	Trem-like transcript 2 protein.	0.738
CD2AP	ABCA7	ENSVVUP00000041192	ENSVVUP00000031339	CD2-associated protein.	ATP-binding cassette sub-family A member 7.	0.505
CD2AP	CASS4	ENSVVUP00000041192	ENSVVUP00000023671	CD2-associated protein.	Cas scaffolding protein family member 4.	0.552
CD2AP	RIN3	ENSVVUP00000041192	ENSVVUP00000034090	CD2-associated protein.	Ras and Rab interactor 3.	0.873
CD2AP	TREML2	ENSVVUP00000041192	ENSVVUP00000037254	CD2-associated protein.	Trem-like transcript 2 protein.	0.454
RIN3	CASS4	ENSVVUP00000034090	ENSVVUP00000023671	Ras and Rab interactor 3.	Cas scaffolding protein family member 4.	0.524
RIN3	CD2AP	ENSVVUP00000034090	ENSVVUP00000041192	Ras and Rab interactor 3.	CD2-associated protein.	0.873
SLC24A4	ABCA7	ENSVVUP00000034096	ENSVVUP00000031339	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	ATP-binding cassette sub-family A member 7.	0.622
SLC24A4	CASS4	ENSVVUP00000034096	ENSVVUP00000023671	Sodium/potassium/calcium exchanger 4; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Cas scaffolding protein family member 4.	0.475
TREML2	CASS4	ENSVVUP00000037254	ENSVVUP00000023671	Trem-like transcript 2 protein.	Cas scaffolding protein family member 4.	0.738
TREML2	CD2AP	ENSVVUP00000037254	ENSVVUP00000041192	Trem-like transcript 2 protein.	CD2-associated protein.	0.454