(16 nodes) Mixed, incl. U2AF complex, and Negative regulation of mRNA splicing, via spliceosome network (Vulpes vulpes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRA2A	Transformer-2 protein homolog alpha isoform X1. (281 aa)
	SRSF5	Serine/arginine-rich splicing factor 5 isoform X1. (272 aa)
	ENSVVUP00000008110	annotation not available (169 aa)
	U2AF2	Splicing factor U2AF 65 kDa subunit isoform X2. (683 aa)
	SRSF11	Serine/arginine-rich splicing factor 11 isoform X1. (424 aa)
	ENSVVUP00000013086	annotation not available (453 aa)
	SRSF1	Serine/arginine-rich splicing factor 1. (253 aa)
	SRSF4	Serine/arginine-rich splicing factor 6. (477 aa)
	TRA2B	Transformer-2 protein homolog beta isoform X1. (478 aa)
	U2AF1L4	Splicing factor U2AF 26 kDa subunit isoform X1. (220 aa)
	U2AF1	Splicing factor U2AF 35 kDa subunit. (241 aa)
	SRSF7	Serine/arginine-rich splicing factor 7 isoform X4. (137 aa)
	ENSVVUP00000026261	annotation not available (127 aa)
	SRSF9	Serine/arginine-rich splicing factor 9. (221 aa)
	SRSF3	Serine/arginine-rich splicing factor 3. (164 aa)
	SRSF10	Serine/arginine-rich splicing factor 10. (259 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVVUP00000008110	ENSVVUP00000013086	ENSVVUP00000008110	ENSVVUP00000013086	annotation not available	annotation not available	0.779
ENSVVUP00000008110	ENSVVUP00000026261	ENSVVUP00000008110	ENSVVUP00000026261	annotation not available	annotation not available	0.718
ENSVVUP00000008110	SRSF1	ENSVVUP00000008110	ENSVVUP00000016163	annotation not available	Serine/arginine-rich splicing factor 1.	0.966
ENSVVUP00000008110	SRSF10	ENSVVUP00000008110	ENSVVUP00000037645	annotation not available	Serine/arginine-rich splicing factor 10.	0.680
ENSVVUP00000008110	SRSF11	ENSVVUP00000008110	ENSVVUP00000011353	annotation not available	Serine/arginine-rich splicing factor 11 isoform X1.	0.851
ENSVVUP00000008110	SRSF3	ENSVVUP00000008110	ENSVVUP00000036819	annotation not available	Serine/arginine-rich splicing factor 3.	0.957
ENSVVUP00000008110	SRSF4	ENSVVUP00000008110	ENSVVUP00000017215	annotation not available	Serine/arginine-rich splicing factor 6.	0.606
ENSVVUP00000008110	SRSF5	ENSVVUP00000008110	ENSVVUP00000004816	annotation not available	Serine/arginine-rich splicing factor 5 isoform X1.	0.878
ENSVVUP00000008110	SRSF9	ENSVVUP00000008110	ENSVVUP00000028815	annotation not available	Serine/arginine-rich splicing factor 9.	0.919
ENSVVUP00000008110	TRA2A	ENSVVUP00000008110	ENSVVUP00000001233	annotation not available	Transformer-2 protein homolog alpha isoform X1.	0.786
ENSVVUP00000008110	TRA2B	ENSVVUP00000008110	ENSVVUP00000017634	annotation not available	Transformer-2 protein homolog beta isoform X1.	0.913
ENSVVUP00000008110	U2AF1	ENSVVUP00000008110	ENSVVUP00000023481	annotation not available	Splicing factor U2AF 35 kDa subunit.	0.600
ENSVVUP00000008110	U2AF1L4	ENSVVUP00000008110	ENSVVUP00000020384	annotation not available	Splicing factor U2AF 26 kDa subunit isoform X1.	0.576
ENSVVUP00000008110	U2AF2	ENSVVUP00000008110	ENSVVUP00000009334	annotation not available	Splicing factor U2AF 65 kDa subunit isoform X2.	0.884
ENSVVUP00000013086	ENSVVUP00000008110	ENSVVUP00000013086	ENSVVUP00000008110	annotation not available	annotation not available	0.779
ENSVVUP00000013086	ENSVVUP00000026261	ENSVVUP00000013086	ENSVVUP00000026261	annotation not available	annotation not available	0.804
ENSVVUP00000013086	SRSF1	ENSVVUP00000013086	ENSVVUP00000016163	annotation not available	Serine/arginine-rich splicing factor 1.	0.851
ENSVVUP00000013086	SRSF11	ENSVVUP00000013086	ENSVVUP00000011353	annotation not available	Serine/arginine-rich splicing factor 11 isoform X1.	0.412
ENSVVUP00000013086	SRSF3	ENSVVUP00000013086	ENSVVUP00000036819	annotation not available	Serine/arginine-rich splicing factor 3.	0.459
ENSVVUP00000013086	SRSF4	ENSVVUP00000013086	ENSVVUP00000017215	annotation not available	Serine/arginine-rich splicing factor 6.	0.481