STRINGSTRING
ENSVVUP00000000470 ENSVVUP00000000470 PRPF39 PRPF39 ENSVVUP00000001067 ENSVVUP00000001067 ENSVVUP00000001085 ENSVVUP00000001085 CASC3 CASC3 ENSVVUP00000001557 ENSVVUP00000001557 CWC25 CWC25 LOC112906999 LOC112906999 SF3A2 SF3A2 LSM7 LSM7 SNRPG SNRPG SF3A1 SF3A1 SNRPD2 SNRPD2 PRPF4 PRPF4 SNU13 SNU13 PHF5A PHF5A ENSVVUP00000004662 ENSVVUP00000004662 GCFC2 GCFC2 SNRPD1 SNRPD1 SNW1 SNW1 PRPF38A PRPF38A LOC112925673 LOC112925673 CCDC12 CCDC12 SF3B5 SF3B5 LOC112908211 LOC112908211 PRPF19 PRPF19 PRPF18 PRPF18 TXNL4A-2 TXNL4A-2 ENSVVUP00000007289 ENSVVUP00000007289 CWC27 CWC27 ENSVVUP00000007492 ENSVVUP00000007492 ENSVVUP00000007974 ENSVVUP00000007974 CDC40 CDC40 ENSVVUP00000008648 ENSVVUP00000008648 U2AF2 U2AF2 RBM22 RBM22 LSM3 LSM3 RBM8A RBM8A LSM4 LSM4 YJU2 YJU2 PRPF31 PRPF31 ENSVVUP00000011260 ENSVVUP00000011260 SRRM2 SRRM2 BUD31 BUD31 PRPF3 PRPF3 BCAS2 BCAS2 CWC22 CWC22 DHX16 DHX16 ENSVVUP00000013551 ENSVVUP00000013551 ENSVVUP00000013765 ENSVVUP00000013765 ENSVVUP00000014288 ENSVVUP00000014288 ENSVVUP00000014399 ENSVVUP00000014399 MFAP1 MFAP1 SF3B6 SF3B6 LUC7L3 LUC7L3 ENSVVUP00000015561 ENSVVUP00000015561 RNF113A RNF113A ENSVVUP00000016755 ENSVVUP00000016755 CRNKL1 CRNKL1 LSM8 LSM8 DHX15 DHX15 LUC7L LUC7L IK IK SNRPB2 SNRPB2 SNRNP40 SNRNP40 SNRPA1 SNRPA1 PRPF6 PRPF6 ENSVVUP00000020918 ENSVVUP00000020918 TFIP11 TFIP11 LSM2 LSM2 ENSVVUP00000022877 ENSVVUP00000022877 ZMAT2 ZMAT2 DHX8 DHX8 SF3B3 SF3B3 SNRPN SNRPN EIF4A3 EIF4A3 EFTUD2 EFTUD2 ISY1 ISY1 ENSVVUP00000025167 ENSVVUP00000025167 TXNL4A TXNL4A SNRPD3 SNRPD3 SNRPG-2 SNRPG-2 PRPF40A PRPF40A SMU1 SMU1 PRPF8 PRPF8 PRPF40B PRPF40B SNRPC SNRPC SNRNP70 SNRNP70 SF3A3 SF3A3 SNIP1 SNIP1 ENSVVUP00000033508 ENSVVUP00000033508 HTATSF1 HTATSF1 PLRG1 PLRG1 BUD13 BUD13 SNRPB SNRPB ENSVVUP00000035926 ENSVVUP00000035926 SF3B1 SF3B1 ENSVVUP00000036461 ENSVVUP00000036461 AQR AQR CCDC130 CCDC130 SF3B2 SF3B2 SART1 SART1 XAB2 XAB2 SNRNP200 SNRNP200 SYF2 SYF2 LOC112930179 LOC112930179 WBP4 WBP4 CDC5L CDC5L ENSVVUP00000041148 ENSVVUP00000041148 ENSVVUP00000042332 ENSVVUP00000042332
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSVVUP00000000470annotation not available (62 aa)
PRPF39pre-mRNA-processing factor 39 isoform X1. (667 aa)
ENSVVUP00000001067annotation not available (72 aa)
ENSVVUP00000001085annotation not available (87 aa)
CASC3Protein CASC3. (703 aa)
ENSVVUP00000001557annotation not available (118 aa)
CWC25pre-mRNA-splicing factor CWC25 homolog. (420 aa)
LOC112906999Putative RNA-binding protein Luc7-like 2 isoform X1. (408 aa)
SF3A2Splicing factor 3A subunit 2. (478 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (109 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (112 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (525 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (145 aa)
PHF5APHD finger-like domain-containing protein 5A. (110 aa)
ENSVVUP00000004662annotation not available (77 aa)
GCFC2GC-rich sequence DNA-binding factor 2. (740 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (112 aa)
SNW1SNW domain-containing protein 1. (536 aa)
PRPF38Apre-mRNA-splicing factor 38A. (312 aa)
LOC112925673RING finger protein 113A-like. (297 aa)
CCDC12Coiled-coil domain-containing protein 12. (166 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
LOC112908211Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (375 aa)
PRPF19pre-mRNA-processing factor 19. (504 aa)
PRPF18pre-mRNA-splicing factor 18 isoform X1. (351 aa)
TXNL4A-2Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (99 aa)
ENSVVUP00000007289annotation not available (69 aa)
CWC27Spliceosome-associated protein CWC27 homolog. (472 aa)
ENSVVUP00000007492annotation not available (102 aa)
ENSVVUP00000007974annotation not available (128 aa)
CDC40pre-mRNA-processing factor 17. (663 aa)
ENSVVUP00000008648annotation not available (102 aa)
U2AF2Splicing factor U2AF 65 kDa subunit isoform X2. (683 aa)
RBM22pre-mRNA-splicing factor RBM22. (420 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (195 aa)
YJU2YJU2 splicing factor homolog. (338 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
ENSVVUP00000011260annotation not available (186 aa)
SRRM2Serine/arginine repetitive matrix protein 2 isoform X1. (2754 aa)
BUD31Protein BUD31 homolog. (144 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (692 aa)
BCAS2pre-mRNA-splicing factor SPF27. (225 aa)
CWC22pre-mRNA-splicing factor CWC22 homolog isoform X1. (907 aa)
DHX16pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1105 aa)
ENSVVUP00000013551annotation not available (165 aa)
ENSVVUP00000013765annotation not available (205 aa)
ENSVVUP00000014288annotation not available (180 aa)
ENSVVUP00000014399annotation not available (159 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
LUC7L3Luc7-like protein 3 isoform X2. (472 aa)
ENSVVUP00000015561annotation not available (77 aa)
RNF113ARING finger protein 113A. (348 aa)
ENSVVUP00000016755annotation not available (62 aa)
CRNKL1Crooked neck-like protein 1. (834 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (91 aa)
DHX15pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (840 aa)
LUC7LPutative RNA-binding protein Luc7-like 1 isoform X2. (646 aa)
IKProtein Red. (845 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'' isoform X1. (250 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
PRPF6pre-mRNA-processing factor 6. (941 aa)
ENSVVUP00000020918annotation not available (110 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (766 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2. (81 aa)
ENSVVUP00000022877annotation not available (117 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
DHX8ATP-dependent RNA helicase DHX8. (1260 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (244 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
ISY1pre-mRNA-splicing factor ISY1 homolog. (285 aa)
ENSVVUP00000025167annotation not available (118 aa)
TXNL4AThioredoxin-like protein 4A isoform X2. (227 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (201 aa)
SNRPG-2Small nuclear ribonucleoprotein G. (76 aa)
PRPF40Apre-mRNA-processing factor 40 homolog A isoform X2. (994 aa)
SMU1WD40 repeat-containing protein SMU1 isoform X1. (500 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2360 aa)
PRPF40Bpre-mRNA-processing factor 40 homolog B isoform X1. (883 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa isoform X1. (438 aa)
SF3A3LOW QUALITY PROTEIN: splicing factor 3A subunit 3. (484 aa)
SNIP1Smad nuclear-interacting protein 1. (397 aa)
ENSVVUP00000033508annotation not available (98 aa)
HTATSF1HIV Tat-specific factor 1 isoform X1. (769 aa)
PLRG1Pleiotropic regulator 1 isoform X1. (515 aa)
BUD13BUD13 homolog isoform X1. (752 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ENSVVUP00000035926annotation not available (197 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1379 aa)
ENSVVUP00000036461annotation not available (165 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1484 aa)
CCDC130Coiled-coil domain-containing protein 130. (397 aa)
SF3B2Splicing factor 3B subunit 2 isoform X1. (895 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1. (806 aa)
XAB2pre-mRNA-splicing factor SYF1. (885 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2141 aa)
SYF2pre-mRNA-splicing factor SYF2. (246 aa)
LOC112930179pre-mRNA-splicing factor SYF2-like. (248 aa)
WBP4WW domain-binding protein 4 isoform X1. (282 aa)
CDC5LCell division cycle 5-like protein. (802 aa)
ENSVVUP00000041148annotation not available (102 aa)
ENSVVUP00000042332annotation not available (107 aa)
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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