15 items (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
	ENSVVUP00000041148	annotation not available (102 aa)
	DDX39A	ATP-dependent RNA helicase DDX39A. (427 aa)
	ENSVVUP00000033508	annotation not available (98 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	DDX39B	Spliceosome RNA helicase DDX39B isoform X1. (463 aa)
	LSM2	U6 snRNA-associated Sm-like protein LSm2. (81 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (91 aa)
	LSM6	U6 snRNA-associated Sm-like protein LSm6. (117 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (195 aa)
	ENSVVUP00000008648	annotation not available (102 aa)
	ENSVVUP00000007492	annotation not available (102 aa)
	CUNH19orf54	UPF0692 protein C19orf54 homolog isoform X1. (336 aa)
	ENSVVUP00000004662	annotation not available (77 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (109 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUNH19orf54	ENSVVUP00000004662	ENSVVUP00000007453	ENSVVUP00000004662	UPF0692 protein C19orf54 homolog isoform X1.	annotation not available	0.757
CUNH19orf54	LSM2	ENSVVUP00000007453	ENSVVUP00000022183	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm2.	0.889
CUNH19orf54	LSM4	ENSVVUP00000007453	ENSVVUP00000011011	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.831
CUNH19orf54	LSM5	ENSVVUP00000007453	ENSVVUP00000029175	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.881
CUNH19orf54	LSM6	ENSVVUP00000007453	ENSVVUP00000012623	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm6.	0.857
CUNH19orf54	LSM7	ENSVVUP00000007453	ENSVVUP00000003399	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm7.	0.833
CUNH19orf54	LSM8	ENSVVUP00000007453	ENSVVUP00000017992	UPF0692 protein C19orf54 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.757
DDX39A	DDX39B	ENSVVUP00000037701	ENSVVUP00000027896	ATP-dependent RNA helicase DDX39A.	Spliceosome RNA helicase DDX39B isoform X1.	0.744
DDX39A	LSM2	ENSVVUP00000037701	ENSVVUP00000022183	ATP-dependent RNA helicase DDX39A.	U6 snRNA-associated Sm-like protein LSm2.	0.461
DDX39A	LSM4	ENSVVUP00000037701	ENSVVUP00000011011	ATP-dependent RNA helicase DDX39A.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.474
DDX39A	LSM6	ENSVVUP00000037701	ENSVVUP00000012623	ATP-dependent RNA helicase DDX39A.	U6 snRNA-associated Sm-like protein LSm6.	0.408
DDX39A	LSM7	ENSVVUP00000037701	ENSVVUP00000003399	ATP-dependent RNA helicase DDX39A.	U6 snRNA-associated Sm-like protein LSm7.	0.504
DDX39B	DDX39A	ENSVVUP00000027896	ENSVVUP00000037701	Spliceosome RNA helicase DDX39B isoform X1.	ATP-dependent RNA helicase DDX39A.	0.744
DDX39B	LSM2	ENSVVUP00000027896	ENSVVUP00000022183	Spliceosome RNA helicase DDX39B isoform X1.	U6 snRNA-associated Sm-like protein LSm2.	0.461
DDX39B	LSM4	ENSVVUP00000027896	ENSVVUP00000011011	Spliceosome RNA helicase DDX39B isoform X1.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.474
DDX39B	LSM6	ENSVVUP00000027896	ENSVVUP00000012623	Spliceosome RNA helicase DDX39B isoform X1.	U6 snRNA-associated Sm-like protein LSm6.	0.408
DDX39B	LSM7	ENSVVUP00000027896	ENSVVUP00000003399	Spliceosome RNA helicase DDX39B isoform X1.	U6 snRNA-associated Sm-like protein LSm7.	0.504
ENSVVUP00000004662	CUNH19orf54	ENSVVUP00000004662	ENSVVUP00000007453	annotation not available	UPF0692 protein C19orf54 homolog isoform X1.	0.757
ENSVVUP00000004662	ENSVVUP00000007492	ENSVVUP00000004662	ENSVVUP00000007492	annotation not available	annotation not available	0.855
ENSVVUP00000004662	ENSVVUP00000008648	ENSVVUP00000004662	ENSVVUP00000008648	annotation not available	annotation not available	0.855