24 items (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC112919020	LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like. (234 aa)
	ENSVVUP00000007289	annotation not available (69 aa)
	SNRNP48	U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (340 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (112 aa)
	PHF5A	PHD finger-like domain-containing protein 5A. (110 aa)
	ZMAT5	Zinc finger matrin-type protein 5. (170 aa)
	SNRPG	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (109 aa)
	ENSVVUP00000001067	annotation not available (72 aa)
	ENSVVUP00000000470	annotation not available (62 aa)
	RNPC3	RNA-binding protein 40 isoform X1. (518 aa)
	KMT5A	N-lysine methyltransferase KMT5A isoform X4. (246 aa)
	SF3B2	Splicing factor 3B subunit 2 isoform X1. (895 aa)
	SF3B1	Splicing factor 3B subunit 1 isoform X1. (1379 aa)
	SNRPG-2	Small nuclear ribonucleoprotein G. (76 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (201 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	ZCRB1	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 isoform X1. (217 aa)
	PDCD7	LOW QUALITY PROTEIN: programmed cell death protein 7. (569 aa)
	SNRNP25	U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (123 aa)
	DHX15	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (840 aa)
	SF3B6	Splicing factor 3B subunit 6. (125 aa)
	RBM41	RNA-binding protein 41 isoform X1. (484 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSVVUP00000000470	ENSVVUP00000018173	ENSVVUP00000000470	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.772
DHX15	ENSVVUP00000001067	ENSVVUP00000018173	ENSVVUP00000001067	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.772
DHX15	ENSVVUP00000007289	ENSVVUP00000018173	ENSVVUP00000007289	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	annotation not available	0.772
DHX15	PHF5A	ENSVVUP00000018173	ENSVVUP00000004627	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	PHD finger-like domain-containing protein 5A.	0.970
DHX15	RBM41	ENSVVUP00000018173	ENSVVUP00000013206	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	RNA-binding protein 41 isoform X1.	0.545
DHX15	RNPC3	ENSVVUP00000018173	ENSVVUP00000000363	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	RNA-binding protein 40 isoform X1.	0.545
DHX15	SF3B1	ENSVVUP00000018173	ENSVVUP00000036121	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor 3B subunit 1 isoform X1.	0.916
DHX15	SF3B2	ENSVVUP00000018173	ENSVVUP00000037832	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor 3B subunit 2 isoform X1.	0.826
DHX15	SF3B3	ENSVVUP00000018173	ENSVVUP00000024472	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor 3B subunit 3.	0.856
DHX15	SF3B5	ENSVVUP00000018173	ENSVVUP00000006025	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.663
DHX15	SF3B6	ENSVVUP00000018173	ENSVVUP00000014818	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Splicing factor 3B subunit 6.	0.726
DHX15	SNRNP48	ENSVVUP00000018173	ENSVVUP00000006445	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	U11/U12 small nuclear ribonucleoprotein 48 kDa protein.	0.417
DHX15	SNRPD1	ENSVVUP00000018173	ENSVVUP00000005104	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA.	0.941
DHX15	SNRPD3	ENSVVUP00000018173	ENSVVUP00000026351	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.	0.949
DHX15	SNRPG	ENSVVUP00000018173	ENSVVUP00000003669	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.772
DHX15	SNRPG-2	ENSVVUP00000018173	ENSVVUP00000026357	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	Small nuclear ribonucleoprotein G.	0.772
ENSVVUP00000000470	DHX15	ENSVVUP00000000470	ENSVVUP00000018173	annotation not available	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.	0.772
ENSVVUP00000000470	KMT5A	ENSVVUP00000000470	ENSVVUP00000038911	annotation not available	N-lysine methyltransferase KMT5A isoform X4.	0.704
ENSVVUP00000000470	LOC112919020	ENSVVUP00000000470	ENSVVUP00000010400	annotation not available	LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like.	0.704
ENSVVUP00000000470	LSM7	ENSVVUP00000000470	ENSVVUP00000003399	annotation not available	U6 snRNA-associated Sm-like protein LSm7.	0.791