(11 nodes) U3 snoRNA binding network (Vulpes vulpes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBL3	Transducin beta-like protein 3 isoform X2. (804 aa)
	RRP9	U3 small nucleolar RNA-interacting protein 2. (431 aa)
	DHX37	Probable ATP-dependent RNA helicase DHX37. (1221 aa)
	TSR1	pre-rRNA-processing protein TSR1 homolog. (801 aa)
	BMS1	Ribosome biogenesis protein BMS1 homolog isoform X1. (1287 aa)
	PRKDC	DNA-dependent protein kinase catalytic subunit isoform X2; Belongs to the PI3/PI4-kinase family. (4136 aa)
	ISG20	Interferon-stimulated gene 20 kDa protein. (171 aa)
	UTP25	Digestive organ expansion factor homolog. (758 aa)
	XRCC5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (799 aa)
	ENSVVUP00000007974	annotation not available (128 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (145 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	DHX37	ENSVVUP00000029163	ENSVVUP00000035960	Ribosome biogenesis protein BMS1 homolog isoform X1.	Probable ATP-dependent RNA helicase DHX37.	0.807
BMS1	ENSVVUP00000007974	ENSVVUP00000029163	ENSVVUP00000007974	Ribosome biogenesis protein BMS1 homolog isoform X1.	annotation not available	0.887
BMS1	RRP9	ENSVVUP00000029163	ENSVVUP00000037577	Ribosome biogenesis protein BMS1 homolog isoform X1.	U3 small nucleolar RNA-interacting protein 2.	0.987
BMS1	SNU13	ENSVVUP00000029163	ENSVVUP00000004358	Ribosome biogenesis protein BMS1 homolog isoform X1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.887
BMS1	TBL3	ENSVVUP00000029163	ENSVVUP00000013069	Ribosome biogenesis protein BMS1 homolog isoform X1.	Transducin beta-like protein 3 isoform X2.	0.994
BMS1	TSR1	ENSVVUP00000029163	ENSVVUP00000029786	Ribosome biogenesis protein BMS1 homolog isoform X1.	pre-rRNA-processing protein TSR1 homolog.	0.902
BMS1	UTP25	ENSVVUP00000029163	ENSVVUP00000012879	Ribosome biogenesis protein BMS1 homolog isoform X1.	Digestive organ expansion factor homolog.	0.599
DHX37	BMS1	ENSVVUP00000035960	ENSVVUP00000029163	Probable ATP-dependent RNA helicase DHX37.	Ribosome biogenesis protein BMS1 homolog isoform X1.	0.807
DHX37	ENSVVUP00000007974	ENSVVUP00000035960	ENSVVUP00000007974	Probable ATP-dependent RNA helicase DHX37.	annotation not available	0.510
DHX37	RRP9	ENSVVUP00000035960	ENSVVUP00000037577	Probable ATP-dependent RNA helicase DHX37.	U3 small nucleolar RNA-interacting protein 2.	0.754
DHX37	SNU13	ENSVVUP00000035960	ENSVVUP00000004358	Probable ATP-dependent RNA helicase DHX37.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.510
DHX37	TBL3	ENSVVUP00000035960	ENSVVUP00000013069	Probable ATP-dependent RNA helicase DHX37.	Transducin beta-like protein 3 isoform X2.	0.708
DHX37	UTP25	ENSVVUP00000035960	ENSVVUP00000012879	Probable ATP-dependent RNA helicase DHX37.	Digestive organ expansion factor homolog.	0.964
ENSVVUP00000007974	BMS1	ENSVVUP00000007974	ENSVVUP00000029163	annotation not available	Ribosome biogenesis protein BMS1 homolog isoform X1.	0.887
ENSVVUP00000007974	DHX37	ENSVVUP00000007974	ENSVVUP00000035960	annotation not available	Probable ATP-dependent RNA helicase DHX37.	0.510
ENSVVUP00000007974	RRP9	ENSVVUP00000007974	ENSVVUP00000037577	annotation not available	U3 small nucleolar RNA-interacting protein 2.	0.985
ENSVVUP00000007974	TBL3	ENSVVUP00000007974	ENSVVUP00000013069	annotation not available	Transducin beta-like protein 3 isoform X2.	0.904
ENSVVUP00000007974	TSR1	ENSVVUP00000007974	ENSVVUP00000029786	annotation not available	pre-rRNA-processing protein TSR1 homolog.	0.574
ENSVVUP00000007974	UTP25	ENSVVUP00000007974	ENSVVUP00000012879	annotation not available	Digestive organ expansion factor homolog.	0.427
PRKDC	XRCC5	ENSVVUP00000022479	ENSVVUP00000012044	DNA-dependent protein kinase catalytic subunit isoform X2; Belongs to the PI3/PI4-kinase family.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.990