(16 nodes) Transcytosis network (Vulpes vulpes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB11B	Ras-related protein Rab-11B. (218 aa)
	PIGR	Polymeric immunoglobulin receptor. (764 aa)
	RAB5A	Ras-related protein Rab-5A. (215 aa)
	RAB17	Ras-related protein Rab-17. (353 aa)
	VPS35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (801 aa)
	MFSD2A	Sodium-dependent lysophosphatidylcholine symporter 1. (523 aa)
	IGF1R	Tyrosine-protein kinase receptor. (1249 aa)
	RAB11A	Ras-related protein Rab-11A. (216 aa)
	MAL2	Protein MAL2. (108 aa)
	CLTC	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1536 aa)
	LRP1	Prolow-density lipoprotein receptor-related protein 1. (4498 aa)
	GP2	Pancreatic secretory granule membrane major glycoprotein GP2 isoform X1. (485 aa)
	USO1	General vesicular transport factor p115 isoform X1. (967 aa)
	AGER	Advanced glycosylation end product-specific receptor. (405 aa)
	LRPAP1	Alpha-2-macroglobulin receptor-associated protein. (367 aa)
	CLTCL1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1660 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLTC	CLTCL1	ENSVVUP00000024324	ENSVVUP00000035065	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.911
CLTC	RAB17	ENSVVUP00000024324	ENSVVUP00000002010	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-17.	0.417
CLTC	RAB5A	ENSVVUP00000024324	ENSVVUP00000000519	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-5A.	0.459
CLTC	VPS35	ENSVVUP00000024324	ENSVVUP00000002622	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.410
CLTCL1	CLTC	ENSVVUP00000035065	ENSVVUP00000024324	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.911
CLTCL1	RAB17	ENSVVUP00000035065	ENSVVUP00000002010	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-17.	0.417
CLTCL1	RAB5A	ENSVVUP00000035065	ENSVVUP00000000519	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-5A.	0.417
LRP1	LRPAP1	ENSVVUP00000025207	ENSVVUP00000034708	Prolow-density lipoprotein receptor-related protein 1.	Alpha-2-macroglobulin receptor-associated protein.	0.962
LRPAP1	LRP1	ENSVVUP00000034708	ENSVVUP00000025207	Alpha-2-macroglobulin receptor-associated protein.	Prolow-density lipoprotein receptor-related protein 1.	0.962
RAB11A	RAB11B	ENSVVUP00000019543	ENSVVUP00000035032	Ras-related protein Rab-11A.	Ras-related protein Rab-11B.	0.900
RAB11A	RAB17	ENSVVUP00000019543	ENSVVUP00000002010	Ras-related protein Rab-11A.	Ras-related protein Rab-17.	0.473
RAB11A	RAB5A	ENSVVUP00000019543	ENSVVUP00000000519	Ras-related protein Rab-11A.	Ras-related protein Rab-5A.	0.458
RAB11B	RAB11A	ENSVVUP00000035032	ENSVVUP00000019543	Ras-related protein Rab-11B.	Ras-related protein Rab-11A.	0.900
RAB11B	RAB17	ENSVVUP00000035032	ENSVVUP00000002010	Ras-related protein Rab-11B.	Ras-related protein Rab-17.	0.472
RAB11B	RAB5A	ENSVVUP00000035032	ENSVVUP00000000519	Ras-related protein Rab-11B.	Ras-related protein Rab-5A.	0.455
RAB17	CLTC	ENSVVUP00000002010	ENSVVUP00000024324	Ras-related protein Rab-17.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.417
RAB17	CLTCL1	ENSVVUP00000002010	ENSVVUP00000035065	Ras-related protein Rab-17.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.417
RAB17	RAB11A	ENSVVUP00000002010	ENSVVUP00000019543	Ras-related protein Rab-17.	Ras-related protein Rab-11A.	0.473
RAB17	RAB11B	ENSVVUP00000002010	ENSVVUP00000035032	Ras-related protein Rab-17.	Ras-related protein Rab-11B.	0.472
RAB5A	CLTC	ENSVVUP00000000519	ENSVVUP00000024324	Ras-related protein Rab-5A.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.459