53 items (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSVVUP00000007974	annotation not available (128 aa)
	TXNL4A	Thioredoxin-like protein 4A isoform X2. (227 aa)
	SMU1	WD40 repeat-containing protein SMU1 isoform X1. (500 aa)
	PRPF8	pre-mRNA-processing-splicing factor 8. (2360 aa)
	SF3A3	LOW QUALITY PROTEIN: splicing factor 3A subunit 3. (484 aa)
	SNIP1	Smad nuclear-interacting protein 1. (397 aa)
	ENSVVUP00000033508	annotation not available (98 aa)
	BUD13	BUD13 homolog isoform X1. (752 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	ENSVVUP00000035926	annotation not available (197 aa)
	SF3B1	Splicing factor 3B subunit 1 isoform X1. (1379 aa)
	SF3B2	Splicing factor 3B subunit 2 isoform X1. (895 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1. (806 aa)
	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2141 aa)
	WBP4	WW domain-binding protein 4 isoform X1. (282 aa)
	ENSVVUP00000041148	annotation not available (102 aa)
	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
	SF3B3	Splicing factor 3B subunit 3. (1217 aa)
	ZMAT2	Zinc finger matrin-type protein 2. (199 aa)
	ENSVVUP00000022877	annotation not available (117 aa)
	LSM2	U6 snRNA-associated Sm-like protein LSm2. (81 aa)
	PRPF6	pre-mRNA-processing factor 6. (941 aa)
	SNRPA1	U2 small nuclear ribonucleoprotein A. (255 aa)
	SNRPB2	U2 small nuclear ribonucleoprotein B'' isoform X1. (250 aa)
	ENSVVUP00000001085	annotation not available (87 aa)
	SF3A2	Splicing factor 3A subunit 2. (478 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (109 aa)
	SF3A1	Splicing factor 3A subunit 1. (793 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (112 aa)
	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4. (525 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (145 aa)
	PHF5A	PHD finger-like domain-containing protein 5A. (110 aa)
	ENSVVUP00000004662	annotation not available (77 aa)
	PRPF38A	pre-mRNA-splicing factor 38A. (312 aa)
	MFAP1	Microfibrillar-associated protein 1. (439 aa)
	ENSVVUP00000013765	annotation not available (205 aa)
	DHX16	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (1105 aa)
	CWC22	pre-mRNA-splicing factor CWC22 homolog isoform X1. (907 aa)
	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (692 aa)
	SRRM2	Serine/arginine repetitive matrix protein 2 isoform X1. (2754 aa)
	ENSVVUP00000011260	annotation not available (186 aa)
	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (195 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
	ENSVVUP00000008648	annotation not available (102 aa)
	ENSVVUP00000015561	annotation not available (77 aa)
	ENSVVUP00000016755	annotation not available (62 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (91 aa)
	IK	Protein Red. (845 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	TXNL4A-2	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (99 aa)
	CWC27	Spliceosome-associated protein CWC27 homolog. (472 aa)
	ENSVVUP00000007492	annotation not available (102 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BUD13	CWC22	ENSVVUP00000035010	ENSVVUP00000013250	BUD13 homolog isoform X1.	pre-mRNA-splicing factor CWC22 homolog isoform X1.	0.954
BUD13	CWC27	ENSVVUP00000035010	ENSVVUP00000007324	BUD13 homolog isoform X1.	Spliceosome-associated protein CWC27 homolog.	0.938
BUD13	DHX16	ENSVVUP00000035010	ENSVVUP00000013375	BUD13 homolog isoform X1.	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16.	0.939
BUD13	EFTUD2	ENSVVUP00000035010	ENSVVUP00000024690	BUD13 homolog isoform X1.	116 kDa U5 small nuclear ribonucleoprotein component.	0.930
BUD13	ENSVVUP00000001085	ENSVVUP00000035010	ENSVVUP00000001085	BUD13 homolog isoform X1.	annotation not available	0.585
BUD13	ENSVVUP00000004662	ENSVVUP00000035010	ENSVVUP00000004662	BUD13 homolog isoform X1.	annotation not available	0.551
BUD13	ENSVVUP00000007492	ENSVVUP00000035010	ENSVVUP00000007492	BUD13 homolog isoform X1.	annotation not available	0.460
BUD13	ENSVVUP00000007974	ENSVVUP00000035010	ENSVVUP00000007974	BUD13 homolog isoform X1.	annotation not available	0.524
BUD13	ENSVVUP00000008648	ENSVVUP00000035010	ENSVVUP00000008648	BUD13 homolog isoform X1.	annotation not available	0.460
BUD13	ENSVVUP00000011260	ENSVVUP00000035010	ENSVVUP00000011260	BUD13 homolog isoform X1.	annotation not available	0.810
BUD13	ENSVVUP00000015561	ENSVVUP00000035010	ENSVVUP00000015561	BUD13 homolog isoform X1.	annotation not available	0.597
BUD13	ENSVVUP00000022877	ENSVVUP00000035010	ENSVVUP00000022877	BUD13 homolog isoform X1.	annotation not available	0.710
BUD13	ENSVVUP00000033508	ENSVVUP00000035010	ENSVVUP00000033508	BUD13 homolog isoform X1.	annotation not available	0.460
BUD13	ENSVVUP00000035926	ENSVVUP00000035010	ENSVVUP00000035926	BUD13 homolog isoform X1.	annotation not available	0.585
BUD13	ENSVVUP00000041148	ENSVVUP00000035010	ENSVVUP00000041148	BUD13 homolog isoform X1.	annotation not available	0.460
BUD13	LSM2	ENSVVUP00000035010	ENSVVUP00000022183	BUD13 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm2.	0.641
BUD13	LSM3	ENSVVUP00000035010	ENSVVUP00000009900	BUD13 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.470
BUD13	LSM4	ENSVVUP00000035010	ENSVVUP00000011011	BUD13 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.626
BUD13	LSM7	ENSVVUP00000035010	ENSVVUP00000003399	BUD13 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm7.	0.681
BUD13	LSM8	ENSVVUP00000035010	ENSVVUP00000017992	BUD13 homolog isoform X1.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.551