STRINGSTRING
SNRPD2 SNRPD2 SNRPB SNRPB ENSVVUP00000033508 ENSVVUP00000033508 PRPF8 PRPF8 LSM5 LSM5 ENSVVUP00000028270 ENSVVUP00000028270 DDX23 DDX23 SNRPG-2 SNRPG-2 SNRPD3 SNRPD3 TXNL4A TXNL4A ENSVVUP00000025079 ENSVVUP00000025079 EFTUD2 EFTUD2 SNRPN SNRPN TXNL4B TXNL4B ZMAT2 ZMAT2 ENSVVUP00000022877 ENSVVUP00000022877 LSM2 LSM2 RBM42 RBM42 SNRPE SNRPE PRPF6 PRPF6 SNRNP40 SNRNP40 ENSVVUP00000019225 ENSVVUP00000019225 LSM8 LSM8 ENSVVUP00000016755 ENSVVUP00000016755 ENSVVUP00000015561 ENSVVUP00000015561 ENSVVUP00000013765 ENSVVUP00000013765 LSM6 LSM6 PRPF3 PRPF3 PRPF31 PRPF31 LSM4 LSM4 ENSVVUP00000010769 ENSVVUP00000010769 LSM3 LSM3 ENSVVUP00000008648 ENSVVUP00000008648 ENSVVUP00000008070 ENSVVUP00000008070 ENSVVUP00000007974 ENSVVUP00000007974 ENSVVUP00000007492 ENSVVUP00000007492 CUNH19orf54 CUNH19orf54 SNRPA SNRPA ENSVVUP00000007289 ENSVVUP00000007289 TXNL4A-2 TXNL4A-2 PRPF18 PRPF18 SNRPE-2 SNRPE-2 SNRPD1 SNRPD1 ENSVVUP00000004665 ENSVVUP00000004665 ENSVVUP00000004662 ENSVVUP00000004662 SNU13 SNU13 PRPF4 PRPF4 SNRPG SNRPG LSM7 LSM7 USP39 USP39 ENSVVUP00000001067 ENSVVUP00000001067 ENSVVUP00000000470 ENSVVUP00000000470 ENSVVUP00000000200 ENSVVUP00000000200 ENSVVUP00000041148 ENSVVUP00000041148 ENSVVUP00000039810 ENSVVUP00000039810 SNRNP27 SNRNP27 SNRNP200 SNRNP200 SART1 SART1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (112 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ENSVVUP00000033508annotation not available (98 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2360 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
ENSVVUP00000028270annotation not available (53 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (820 aa)
SNRPG-2Small nuclear ribonucleoprotein G. (76 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (201 aa)
TXNL4AThioredoxin-like protein 4A isoform X2. (227 aa)
ENSVVUP00000025079annotation not available (79 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (244 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
ENSVVUP00000022877annotation not available (117 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2. (81 aa)
RBM42RNA-binding protein 42 isoform X1. (468 aa)
SNRPESmall nuclear ribonucleoprotein E. (92 aa)
PRPF6pre-mRNA-processing factor 6. (941 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
ENSVVUP00000019225annotation not available (112 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (91 aa)
ENSVVUP00000016755annotation not available (62 aa)
ENSVVUP00000015561annotation not available (77 aa)
ENSVVUP00000013765annotation not available (205 aa)
LSM6U6 snRNA-associated Sm-like protein LSm6. (117 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1. (692 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (195 aa)
ENSVVUP00000010769annotation not available (73 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
ENSVVUP00000008648annotation not available (102 aa)
ENSVVUP00000008070annotation not available (93 aa)
ENSVVUP00000007974annotation not available (128 aa)
ENSVVUP00000007492annotation not available (102 aa)
CUNH19orf54UPF0692 protein C19orf54 homolog isoform X1. (336 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (282 aa)
ENSVVUP00000007289annotation not available (69 aa)
TXNL4A-2Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (99 aa)
PRPF18pre-mRNA-splicing factor 18 isoform X1. (351 aa)
SNRPE-2Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (94 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (112 aa)
ENSVVUP00000004665annotation not available (88 aa)
ENSVVUP00000004662annotation not available (77 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (145 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (525 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (109 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2 isoform X1. (563 aa)
ENSVVUP00000001067annotation not available (72 aa)
ENSVVUP00000000470annotation not available (62 aa)
ENSVVUP00000000200annotation not available (73 aa)
ENSVVUP00000041148annotation not available (102 aa)
ENSVVUP00000039810annotation not available (49 aa)
SNRNP27Small nuclear ribonucleoprotein U4/U6.U5 subunit 27. (176 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2141 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1. (806 aa)
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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