STRINGSTRING
ALYREF ALYREF MAGOH MAGOH CASC3 CASC3 ENSVVUP00000001631 ENSVVUP00000001631 THOC3 THOC3 CPSF3 CPSF3 POLDIP3 POLDIP3 CSTF2T CSTF2T SYMPK SYMPK SRSF5 SRSF5 SLU7 SLU7 THOC1 THOC1 CSTF2 CSTF2 CPSF7 CPSF7 MAGOHB MAGOHB LOC112908264 LOC112908264 ENSVVUP00000007784 ENSVVUP00000007784 SREK1 SREK1 THOC5 THOC5 CPSF1 CPSF1 ENSVVUP00000008110 ENSVVUP00000008110 PAPOLB PAPOLB CDC40 CDC40 U2AF2 U2AF2 RBM8A RBM8A FYTTD1 FYTTD1 SRSF11 SRSF11 NCBP2 NCBP2 THOC6 THOC6 WDR33 WDR33 CPSF4 CPSF4 RNPS1 RNPS1 CPSF4L CPSF4L NCBP2L NCBP2L CPSF6 CPSF6 ENSVVUP00000014279 ENSVVUP00000014279 C12orf50 C12orf50 UPF3B UPF3B SRSF1 SRSF1 SRSF4 SRSF4 ENSVVUP00000017227 ENSVVUP00000017227 ENSVVUP00000018862 ENSVVUP00000018862 ENSVVUP00000018876 ENSVVUP00000018876 NUDT21 NUDT21 THOC7 THOC7 ENSVVUP00000020020 ENSVVUP00000020020 ZC3H11A ZC3H11A U2AF1L4 U2AF1L4 CSTF3 CSTF3 CLP1 CLP1 U2AF1 U2AF1 CSTF1 CSTF1 DHX38 DHX38 PCF11 PCF11 EIF4A3 EIF4A3 ENSVVUP00000025427 ENSVVUP00000025427 SRSF7 SRSF7 SRSF6 SRSF6 ENSVVUP00000026261 ENSVVUP00000026261 NCBP1 NCBP1 BCL2L2-PABPN1 BCL2L2-PABPN1 DDX39B DDX39B SRSF9 SRSF9 NUDT21-2 NUDT21-2 SARNP SARNP CPSF2 CPSF2 FIP1L1 FIP1L1 SRSF3 SRSF3 DDX39A DDX39A SRRM1 SRRM1 CHTOP CHTOP PAPOLA PAPOLA THOC2 THOC2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALYREFTHO complex subunit 4. (217 aa)
MAGOHProtein mago nashi homolog. (146 aa)
CASC3Protein CASC3. (703 aa)
ENSVVUP00000001631annotation not available (311 aa)
THOC3THO complex subunit 3. (101 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (684 aa)
POLDIP3Polymerase delta-interacting protein 3 isoform X1. (421 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (422 aa)
SYMPKSymplekin. (1149 aa)
SRSF5Serine/arginine-rich splicing factor 5 isoform X1. (272 aa)
SLU7pre-mRNA-splicing factor SLU7. (633 aa)
THOC1THO complex subunit 1. (657 aa)
CSTF2Cleavage stimulation factor subunit 2 isoform X3. (577 aa)
CPSF7Cleavage and polyadenylation specificity factor subunit 7 isoform X1. (562 aa)
MAGOHBProtein mago nashi homolog 2. (148 aa)
LOC112908264Protein mago nashi homolog. (144 aa)
ENSVVUP00000007784annotation not available (132 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1 isoform X4. (198 aa)
THOC5THO complex subunit 5 homolog isoform X2. (700 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (198 aa)
ENSVVUP00000008110annotation not available (169 aa)
PAPOLBPoly(A) polymerase beta. (339 aa)
CDC40pre-mRNA-processing factor 17. (663 aa)
U2AF2Splicing factor U2AF 65 kDa subunit isoform X2. (683 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
FYTTD1UAP56-interacting factor. (297 aa)
SRSF11Serine/arginine-rich splicing factor 11 isoform X1. (424 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
THOC6THO complex subunit 6 homolog. (345 aa)
WDR33pre-mRNA 3' end processing protein WDR33 isoform X1. (1376 aa)
CPSF4Cleavage and polyadenylation specificity factor subunit 4 isoform X2. (244 aa)
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (305 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (162 aa)
NCBP2LNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (141 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6. (536 aa)
ENSVVUP00000014279annotation not available (656 aa)
C12orf50Uncharacterized protein C12orf50 homolog isoform X1. (415 aa)
UPF3BRegulator of nonsense transcripts 3B isoform X2. (464 aa)
SRSF1Serine/arginine-rich splicing factor 1. (253 aa)
SRSF4Serine/arginine-rich splicing factor 6. (477 aa)
ENSVVUP00000017227annotation not available (155 aa)
ENSVVUP00000018862annotation not available (176 aa)
ENSVVUP00000018876annotation not available (133 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (213 aa)
THOC7THO complex subunit 7 homolog isoform X1. (152 aa)
ENSVVUP00000020020annotation not available (69 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A. (815 aa)
U2AF1L4Splicing factor U2AF 26 kDa subunit isoform X1. (220 aa)
CSTF3Cleavage stimulation factor subunit 3. (719 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (439 aa)
U2AF1Splicing factor U2AF 35 kDa subunit. (241 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
DHX38pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1226 aa)
PCF11pre-mRNA cleavage complex 2 protein Pcf11 isoform X1. (1686 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
ENSVVUP00000025427annotation not available (98 aa)
SRSF7Serine/arginine-rich splicing factor 7 isoform X4. (137 aa)
SRSF6Splicing factor, arginine/serine-rich 4/5/6. (212 aa)
ENSVVUP00000026261annotation not available (127 aa)
NCBP1Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
BCL2L2-PABPN1Polyadenylate-binding protein 2 isoform X1. (333 aa)
DDX39BSpliceosome RNA helicase DDX39B isoform X1. (463 aa)
SRSF9Serine/arginine-rich splicing factor 9. (221 aa)
NUDT21-2Cleavage and polyadenylation specificity factor subunit 5. (183 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
FIP1L1pre-mRNA 3'-end-processing factor FIP1 isoform X1. (603 aa)
SRSF3Serine/arginine-rich splicing factor 3. (164 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
SRRM1LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1. (903 aa)
CHTOPChromatin target of PRMT1 protein isoform X1. (277 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
THOC2THO complex subunit 2 isoform X4. (1592 aa)
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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