49 items (Vulpes vulpes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Your Input:
	SNRPG	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
	CSTF2T	Cleavage stimulation factor subunit 2 tau variant. (422 aa)
	CPSF3	Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (684 aa)
	ENSVVUP00000001067	annotation not available (72 aa)
	ENSVVUP00000000470	annotation not available (62 aa)
	ENSVVUP00000000200	annotation not available (73 aa)
	FIP1L1	pre-mRNA 3'-end-processing factor FIP1 isoform X1. (603 aa)
	LSM10	U7 snRNA-associated Sm-like protein LSm10. (123 aa)
	CPSF2	Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
	LOC112910823	Small nuclear ribonucleoprotein F. (78 aa)
	ENSVVUP00000039810	annotation not available (49 aa)
	PAPOLA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	NUDT21-2	Cleavage and polyadenylation specificity factor subunit 5. (183 aa)
	ENSVVUP00000028270	annotation not available (53 aa)
	ZNF473	Zinc finger protein 473 isoform X1. (879 aa)
	BCL2L2-PABPN1	Polyadenylate-binding protein 2 isoform X1. (333 aa)
	NCBP1	Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
	SNRPG-2	Small nuclear ribonucleoprotein G. (76 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (201 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (295 aa)
	ENSVVUP00000025079	annotation not available (79 aa)
	ENSVVUP00000024568	annotation not available (203 aa)
	PCF11	pre-mRNA cleavage complex 2 protein Pcf11 isoform X1. (1686 aa)
	CSTF1	Cleavage stimulation factor subunit 1. (431 aa)
	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (439 aa)
	CSTF3	Cleavage stimulation factor subunit 3. (719 aa)
	SLBP	Histone RNA hairpin-binding protein. (545 aa)
	SNRPE	Small nuclear ribonucleoprotein E. (92 aa)
	NUDT21	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (213 aa)
	ENSVVUP00000018876	annotation not available (133 aa)
	ENSVVUP00000018862	annotation not available (176 aa)
	ENSVVUP00000015561	annotation not available (77 aa)
	CPSF6	Cleavage and polyadenylation specificity factor subunit 6. (536 aa)
	ENSVVUP00000013765	annotation not available (205 aa)
	NCBP2L	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (141 aa)
	CPSF4L	Cleavage and polyadenylation specific factor 4 like. (162 aa)
	CPSF4	Cleavage and polyadenylation specificity factor subunit 4 isoform X2. (244 aa)
	WDR33	pre-mRNA 3' end processing protein WDR33 isoform X1. (1376 aa)
	NCBP2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
	ENSVVUP00000010769	annotation not available (73 aa)
	PAPOLB	Poly(A) polymerase beta. (339 aa)
	CPSF1	Cleavage and polyadenylation specificity factor subunit 1. (198 aa)
	ENSVVUP00000007289	annotation not available (69 aa)
	CPSF7	Cleavage and polyadenylation specificity factor subunit 7 isoform X1. (562 aa)
	CSTF2	Cleavage stimulation factor subunit 2 isoform X3. (577 aa)
	SNRPE-2	Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (94 aa)
	ENSVVUP00000004016	annotation not available (75 aa)
	SYMPK	Symplekin. (1149 aa)

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2L2-PABPN1	CLP1	ENSVVUP00000027114	ENSVVUP00000023399	Polyadenylate-binding protein 2 isoform X1.	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	0.628
BCL2L2-PABPN1	CPSF1	ENSVVUP00000027114	ENSVVUP00000007915	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 1.	0.776
BCL2L2-PABPN1	CPSF2	ENSVVUP00000027114	ENSVVUP00000034101	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 2.	0.777
BCL2L2-PABPN1	CPSF3	ENSVVUP00000027114	ENSVVUP00000002786	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 3 isoform X1.	0.783
BCL2L2-PABPN1	CPSF4	ENSVVUP00000027114	ENSVVUP00000011952	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 4 isoform X2.	0.718
BCL2L2-PABPN1	CPSF4L	ENSVVUP00000027114	ENSVVUP00000013205	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specific factor 4 like.	0.718
BCL2L2-PABPN1	CPSF6	ENSVVUP00000027114	ENSVVUP00000013863	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 6.	0.546
BCL2L2-PABPN1	CPSF7	ENSVVUP00000027114	ENSVVUP00000006350	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 7 isoform X1.	0.576
BCL2L2-PABPN1	CSTF1	ENSVVUP00000027114	ENSVVUP00000023679	Polyadenylate-binding protein 2 isoform X1.	Cleavage stimulation factor subunit 1.	0.777
BCL2L2-PABPN1	CSTF2	ENSVVUP00000027114	ENSVVUP00000006042	Polyadenylate-binding protein 2 isoform X1.	Cleavage stimulation factor subunit 2 isoform X3.	0.864
BCL2L2-PABPN1	CSTF2T	ENSVVUP00000027114	ENSVVUP00000003326	Polyadenylate-binding protein 2 isoform X1.	Cleavage stimulation factor subunit 2 tau variant.	0.864
BCL2L2-PABPN1	CSTF3	ENSVVUP00000027114	ENSVVUP00000021857	Polyadenylate-binding protein 2 isoform X1.	Cleavage stimulation factor subunit 3.	0.755
BCL2L2-PABPN1	ENSVVUP00000018862	ENSVVUP00000027114	ENSVVUP00000018862	Polyadenylate-binding protein 2 isoform X1.	annotation not available	0.546
BCL2L2-PABPN1	ENSVVUP00000018876	ENSVVUP00000027114	ENSVVUP00000018876	Polyadenylate-binding protein 2 isoform X1.	annotation not available	0.546
BCL2L2-PABPN1	FIP1L1	ENSVVUP00000027114	ENSVVUP00000034475	Polyadenylate-binding protein 2 isoform X1.	pre-mRNA 3'-end-processing factor FIP1 isoform X1.	0.836
BCL2L2-PABPN1	NCBP1	ENSVVUP00000027114	ENSVVUP00000026836	Polyadenylate-binding protein 2 isoform X1.	Nuclear cap-binding protein subunit 1 isoform X1.	0.906
BCL2L2-PABPN1	NCBP2	ENSVVUP00000027114	ENSVVUP00000011667	Polyadenylate-binding protein 2 isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.891
BCL2L2-PABPN1	NCBP2L	ENSVVUP00000027114	ENSVVUP00000013312	Polyadenylate-binding protein 2 isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.746
BCL2L2-PABPN1	NUDT21	ENSVVUP00000027114	ENSVVUP00000019000	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.679
BCL2L2-PABPN1	NUDT21-2	ENSVVUP00000027114	ENSVVUP00000029810	Polyadenylate-binding protein 2 isoform X1.	Cleavage and polyadenylation specificity factor subunit 5.	0.679