STRINGSTRING
ALYREF ALYREF HBS1L HBS1L MAGOH MAGOH CASC3 CASC3 PPP2R2C PPP2R2C PPP2R2D PPP2R2D CPSF3 CPSF3 PPP1CB PPP1CB SYMPK SYMPK PPP2R2A PPP2R2A SSU72 SSU72 CPSF7 CPSF7 MAGOHB MAGOHB LOC112908264 LOC112908264 PABPC4 PABPC4 LOC112925669 LOC112925669 GSPT2 GSPT2 SMG5 SMG5 PPP2R3A PPP2R3A UPF2 UPF2 PAPOLB PAPOLB RBM8A RBM8A SAP18 SAP18 UPF1 UPF1 PPP2R5A PPP2R5A PPP2R3B PPP2R3B NCBP2 NCBP2 WDR33 WDR33 SMG7 SMG7 RNPS1 RNPS1 RNGTT RNGTT CPSF6 CPSF6 PAPOLG PAPOLG PPP1CA PPP1CA NXT2 NXT2 PPP2R1A PPP2R1A PABPC4L PABPC4L NXF3 NXF3 NXT1 NXT1 PABPC1 PABPC1 PABPC5 PABPC5 UPF3A UPF3A RNMT RNMT LOC112911805 LOC112911805 GLE1 GLE1 CSTF3 CSTF3 PPP1CC PPP1CC CLP1 CLP1 CSTF1 CSTF1 PCF11 PCF11 EIF4A3 EIF4A3 LOC112929505 LOC112929505 ETF1 ETF1 GSPT1 GSPT1 NCBP1 NCBP1 PPP2CB PPP2CB ACIN1 ACIN1 BCL2L2-PABPN1 BCL2L2-PABPN1 PPP2R3C PPP2R3C DDX39B DDX39B SMG1 SMG1 PNN PNN MSI1 MSI1 PPP2R2B PPP2R2B PPP2CA PPP2CA SMG6 SMG6 NUDT21-2 NUDT21-2 PYM1 PYM1 DAZAP1 DAZAP1 CPSF2 CPSF2 FIP1L1 FIP1L1 PELO PELO WDR82 WDR82 TARDBP TARDBP SRRM1 SRRM1 PPP2R5B PPP2R5B PPP2R5D PPP2R5D PAPOLA PAPOLA PPP2R5C PPP2R5C PPP2R5E PPP2R5E NXF1 NXF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALYREFTHO complex subunit 4. (217 aa)
HBS1LHBS1-like protein isoform X1. (685 aa)
MAGOHProtein mago nashi homolog. (146 aa)
CASC3Protein CASC3. (703 aa)
PPP2R2CProtein phosphatase 2, regulatory subunit B, gamma isoform X1. (405 aa)
PPP2R2DSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (470 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3 isoform X1. (684 aa)
PPP1CBSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (332 aa)
SYMPKSymplekin. (1149 aa)
PPP2R2ASerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (466 aa)
SSU72RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (194 aa)
CPSF7Cleavage and polyadenylation specificity factor subunit 7 isoform X1. (562 aa)
MAGOHBProtein mago nashi homolog 2. (148 aa)
LOC112908264Protein mago nashi homolog. (144 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (660 aa)
LOC112925669Nuclear RNA export factor 2-like. (615 aa)
GSPT2Eukaryotic peptide chain release factor GTP-binding subunit ERF3B. (611 aa)
SMG5Protein SMG5 isoform X2. (1011 aa)
PPP2R3ASerine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha. (1152 aa)
UPF2Regulator of nonsense transcripts 2 isoform X1. (1271 aa)
PAPOLBPoly(A) polymerase beta. (339 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
SAP18Histone deacetylase complex subunit SAP18. (172 aa)
UPF1Regulator of nonsense transcripts 1 isoform X2. (1119 aa)
PPP2R5ASerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (493 aa)
PPP2R3BSerine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1. (569 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
WDR33pre-mRNA 3' end processing protein WDR33 isoform X1. (1376 aa)
SMG7Protein SMG7 isoform X3. (1191 aa)
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (305 aa)
RNGTTPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (597 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6. (536 aa)
PAPOLGpoly(A) polymerase gamma isoform X1. (809 aa)
PPP1CASerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
NXT2NTF2-related export protein 2 isoform X1. (199 aa)
PPP2R1ASerine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform. (626 aa)
PABPC4LLOW QUALITY PROTEIN: polyadenylate-binding protein 4-like. (219 aa)
NXF3Nuclear RNA export factor 3. (584 aa)
NXT1NTF2-related export protein 1. (140 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (565 aa)
PABPC5Polyadenylate-binding protein 5. (382 aa)
UPF3ARegulator of nonsense transcripts 3A isoform X1. (519 aa)
RNMTmRNA cap guanine-N7 methyltransferase. (507 aa)
LOC112911805Polyadenylate-binding protein 1-like 2. (206 aa)
GLE1Nucleoporin GLE1. (698 aa)
CSTF3Cleavage stimulation factor subunit 3. (719 aa)
PPP1CCSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (337 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (439 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
PCF11pre-mRNA cleavage complex 2 protein Pcf11 isoform X1. (1686 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
LOC112929505ATP-dependent RNA helicase DDX19B isoform X1. (522 aa)
ETF1Eukaryotic peptide chain release factor subunit 1. (437 aa)
GSPT1Eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1. (571 aa)
NCBP1Nuclear cap-binding protein subunit 1 isoform X1. (790 aa)
PPP2CBSerine/threonine-protein phosphatase. (279 aa)
ACIN1Apoptotic chromatin condensation inducer in the nucleus isoform X1. (1338 aa)
BCL2L2-PABPN1Polyadenylate-binding protein 2 isoform X1. (333 aa)
PPP2R3CSerine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1. (453 aa)
DDX39BSpliceosome RNA helicase DDX39B isoform X1. (463 aa)
SMG1Serine/threonine-protein kinase SMG1 isoform X1; Belongs to the PI3/PI4-kinase family. (3638 aa)
PNNPinin. (765 aa)
MSI1RNA-binding protein Musashi homolog 1. (349 aa)
PPP2R2BSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (512 aa)
PPP2CASerine/threonine-protein phosphatase. (309 aa)
SMG6Telomerase-binding protein EST1A isoform X1. (1412 aa)
NUDT21-2Cleavage and polyadenylation specificity factor subunit 5. (183 aa)
PYM1Partner of Y14 and mago. (221 aa)
DAZAP1DAZ-associated protein 1 isoform X1. (420 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
FIP1L1pre-mRNA 3'-end-processing factor FIP1 isoform X1. (603 aa)
PELOProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
WDR82WD repeat-containing protein 82. (313 aa)
TARDBPTAR DNA-binding protein 43 isoform X1. (452 aa)
SRRM1LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1. (903 aa)
PPP2R5BSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (497 aa)
PPP2R5DSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (604 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
PPP2R5CSerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (543 aa)
PPP2R5ESerine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (498 aa)
NXF1Nuclear RNA export factor 1. (704 aa)
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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