(20 nodes) UBX domain, and VCP-NPL4-UFD1 AAA ATPase complex network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBE4A	Ubiquitination factor E4A. (1067 aa)
	PLAA	Phospholipase A2 activating protein. (691 aa)
	UFD1	Ubiquitin recognition factor in ER associated degradation 1. (307 aa)
	SVIP	Small VCP interacting protein. (77 aa)
	UBXN10	UBX domain protein 10. (281 aa)
	UBXN7	UBX domain protein 7. (520 aa)
	NPLOC4	NPL4 homolog, ubiquitin recognition factor. (592 aa)
	UBXN4	UBX domain protein 4. (507 aa)
	UBXN2B	UBX domain protein 2B. (330 aa)
	UBXN6	UBX domain protein 6. (442 aa)
	NSFL1C	NSFL1 cofactor. (343 aa)
	UBXN8	UBX domain protein 8. (235 aa)
	YOD1	YOD1 deubiquitinase. (348 aa)
	FAF2	Fas associated factor family member 2. (417 aa)
	SPATA5	Spermatogenesis associated 5. (756 aa)
	VCP	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	ASPSCR1	ASPSCR1 tether for SLC2A4, UBX domain containing. (462 aa)
	SPATA5L1	Spermatogenesis associated 5 like 1. (755 aa)
	UBXN2A	UBX domain protein 2A. (256 aa)
	UBXN1	UBX domain protein 1. (296 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPSCR1	FAF2	ENSUAMP00000032049	ENSUAMP00000028657	ASPSCR1 tether for SLC2A4, UBX domain containing.	Fas associated factor family member 2.	0.733
ASPSCR1	NPLOC4	ENSUAMP00000032049	ENSUAMP00000021432	ASPSCR1 tether for SLC2A4, UBX domain containing.	NPL4 homolog, ubiquitin recognition factor.	0.945
ASPSCR1	NSFL1C	ENSUAMP00000032049	ENSUAMP00000025975	ASPSCR1 tether for SLC2A4, UBX domain containing.	NSFL1 cofactor.	0.956
ASPSCR1	PLAA	ENSUAMP00000032049	ENSUAMP00000006181	ASPSCR1 tether for SLC2A4, UBX domain containing.	Phospholipase A2 activating protein.	0.518
ASPSCR1	SPATA5	ENSUAMP00000032049	ENSUAMP00000029312	ASPSCR1 tether for SLC2A4, UBX domain containing.	Spermatogenesis associated 5.	0.882
ASPSCR1	SPATA5L1	ENSUAMP00000032049	ENSUAMP00000032180	ASPSCR1 tether for SLC2A4, UBX domain containing.	Spermatogenesis associated 5 like 1.	0.882
ASPSCR1	SVIP	ENSUAMP00000032049	ENSUAMP00000013640	ASPSCR1 tether for SLC2A4, UBX domain containing.	Small VCP interacting protein.	0.470
ASPSCR1	UBXN1	ENSUAMP00000032049	ENSUAMP00000034095	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 1.	0.686
ASPSCR1	UBXN10	ENSUAMP00000032049	ENSUAMP00000014547	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 10.	0.936
ASPSCR1	UBXN2A	ENSUAMP00000032049	ENSUAMP00000033239	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 2A.	0.954
ASPSCR1	UBXN2B	ENSUAMP00000032049	ENSUAMP00000023587	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 2B.	0.956
ASPSCR1	UBXN4	ENSUAMP00000032049	ENSUAMP00000021703	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 4.	0.890
ASPSCR1	UBXN6	ENSUAMP00000032049	ENSUAMP00000024574	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 6.	0.940
ASPSCR1	UBXN7	ENSUAMP00000032049	ENSUAMP00000016534	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 7.	0.976
ASPSCR1	UBXN8	ENSUAMP00000032049	ENSUAMP00000027586	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 8.	0.733
ASPSCR1	UFD1	ENSUAMP00000032049	ENSUAMP00000009176	ASPSCR1 tether for SLC2A4, UBX domain containing.	Ubiquitin recognition factor in ER associated degradation 1.	0.447
ASPSCR1	VCP	ENSUAMP00000032049	ENSUAMP00000031714	ASPSCR1 tether for SLC2A4, UBX domain containing.	Valosin containing protein; Belongs to the AAA ATPase family.	0.951
ASPSCR1	YOD1	ENSUAMP00000032049	ENSUAMP00000027690	ASPSCR1 tether for SLC2A4, UBX domain containing.	YOD1 deubiquitinase.	0.419
FAF2	ASPSCR1	ENSUAMP00000028657	ENSUAMP00000032049	Fas associated factor family member 2.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.733
FAF2	NPLOC4	ENSUAMP00000028657	ENSUAMP00000021432	Fas associated factor family member 2.	NPL4 homolog, ubiquitin recognition factor.	0.964