STRINGSTRING
RPF1 RPF1 ENSUAMP00000003903 ENSUAMP00000003903 RSL1D1 RSL1D1 PES1 PES1 FTSJ3 FTSJ3 RRS1 RRS1 WDR12 WDR12 NOC3L NOC3L RSL24D1 RSL24D1 GNL3 GNL3 RPF2 RPF2 GTPBP4 GTPBP4 ENSUAMP00000018826 ENSUAMP00000018826 DDX18 DDX18 WDR74 WDR74 PUM3 PUM3 NIFK NIFK BRIX1 BRIX1 NIP7 NIP7 EBNA1BP2 EBNA1BP2 MRTO4 MRTO4 MAK16 MAK16 NOC2L NOC2L
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPF1Ribosome production factor 1 homolog. (349 aa)
ENSUAMP00000003903Uncharacterized protein. (260 aa)
RSL1D1Ribosomal L1 domain containing 1. (491 aa)
PES1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (589 aa)
FTSJ3FtsJ RNA 2'-O-methyltransferase 3. (683 aa)
RRS1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (365 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
NOC3LNucleolar complex protein 3 homolog. (799 aa)
RSL24D1Ribosomal L24 domain containing 1. (168 aa)
GNL3G protein nucleolar 3. (550 aa)
RPF2Ribosome production factor 2 homolog. (306 aa)
GTPBP4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (645 aa)
ENSUAMP00000018826Uncharacterized protein. (112 aa)
DDX18RNA helicase. (660 aa)
WDR74WD repeat domain 74. (382 aa)
PUM3Pumilio RNA binding family member 3. (432 aa)
NIFKNucleolar protein interacting with the FHA domain of MKI67. (297 aa)
BRIX1Biogenesis of ribosomes BRX1. (339 aa)
NIP7Nucleolar pre-rRNA processing protein NIP7. (183 aa)
EBNA1BP2EBNA1 binding protein 2. (385 aa)
MRTO4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (250 aa)
MAK16Protein MAK16 homolog; Belongs to the MAK16 family. (297 aa)
NOC2LNOC2 like nucleolar associated transcriptional repressor. (553 aa)
Your Current Organism:
Ursus americanus
NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus
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