STRINGSTRING
ENSUAMP00000000999 ENSUAMP00000000999 ENSUAMP00000001028 ENSUAMP00000001028 SF3A3 SF3A3 SF3A1 SF3A1 SF3B3 SF3B3 SNRPF SNRPF SNRPA1 SNRPA1 SNRPE SNRPE SNRPD3 SNRPD3 SNRPD1 SNRPD1 ENSUAMP00000022401 ENSUAMP00000022401 SNRPB2 SNRPB2 SF3B1 SF3B1 SF3B2 SF3B2 ENSUAMP00000028028 ENSUAMP00000028028 SF3B4 SF3B4 PHF5A PHF5A SNRPD2-3 SNRPD2-3 ENSUAMP00000033911 ENSUAMP00000033911 SF3B5 SF3B5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSUAMP00000000999RRM domain-containing protein. (126 aa)
ENSUAMP00000001028SF3A2 domain-containing protein. (192 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SF3A1Splicing factor 3a subunit 1. (795 aa)
SF3B3Splicing factor 3b subunit 3. (1217 aa)
SNRPFSm domain-containing protein. (86 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (257 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (88 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (117 aa)
ENSUAMP00000022401Uncharacterized protein. (471 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (224 aa)
SF3B1Splicing factor 3b subunit 1. (1122 aa)
SF3B2Splicing factor 3b subunit 2. (910 aa)
ENSUAMP00000028028Sm domain-containing protein. (48 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
PHF5APHD finger protein 5A. (85 aa)
SNRPD2-3Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
ENSUAMP00000033911Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
Your Current Organism:
Ursus americanus
NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus
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