10 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
	LSM7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
	ENSUAMP00000003208	Uncharacterized protein. (57 aa)
	C19orf54	Chromosome 19 open reading frame 54. (346 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	LSM8-2	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM5	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (122 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (114 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C19orf54	ENSUAMP00000003208	ENSUAMP00000003268	ENSUAMP00000003208	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.949
C19orf54	LSM1	ENSUAMP00000003268	ENSUAMP00000004477	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.963
C19orf54	LSM4	ENSUAMP00000003268	ENSUAMP00000000719	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.962
C19orf54	LSM5	ENSUAMP00000003268	ENSUAMP00000012056	Chromosome 19 open reading frame 54.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.949
C19orf54	LSM6	ENSUAMP00000003268	ENSUAMP00000017905	Chromosome 19 open reading frame 54.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.972
C19orf54	LSM7	ENSUAMP00000003268	ENSUAMP00000000925	Chromosome 19 open reading frame 54.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.964
C19orf54	LSM8	ENSUAMP00000003268	ENSUAMP00000008123	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.918
C19orf54	LSM8-2	ENSUAMP00000003268	ENSUAMP00000008124	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.918
ENSUAMP00000003208	C19orf54	ENSUAMP00000003208	ENSUAMP00000003268	Uncharacterized protein.	Chromosome 19 open reading frame 54.	0.949
ENSUAMP00000003208	LSM1	ENSUAMP00000003208	ENSUAMP00000004477	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.991
ENSUAMP00000003208	LSM3	ENSUAMP00000003208	ENSUAMP00000021919	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.992
ENSUAMP00000003208	LSM4	ENSUAMP00000003208	ENSUAMP00000000719	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSUAMP00000003208	LSM6	ENSUAMP00000003208	ENSUAMP00000017905	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
ENSUAMP00000003208	LSM7	ENSUAMP00000003208	ENSUAMP00000000925	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.991
ENSUAMP00000003208	LSM8	ENSUAMP00000003208	ENSUAMP00000008123	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.985
ENSUAMP00000003208	LSM8-2	ENSUAMP00000003208	ENSUAMP00000008124	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.985
LSM1	C19orf54	ENSUAMP00000004477	ENSUAMP00000003268	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	Chromosome 19 open reading frame 54.	0.963
LSM1	ENSUAMP00000003208	ENSUAMP00000004477	ENSUAMP00000003208	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	Uncharacterized protein.	0.991
LSM1	LSM3	ENSUAMP00000004477	ENSUAMP00000021919	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1	LSM4	ENSUAMP00000004477	ENSUAMP00000000719	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995