16 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRA2B	Transformer 2 beta homolog. (241 aa)
	SRSF6	Serine and arginine rich splicing factor 6. (344 aa)
	SRSF4	Serine and arginine rich splicing factor 4. (497 aa)
	ENSUAMP00000010189	RRM domain-containing protein. (130 aa)
	ENSUAMP00000010191	Uncharacterized protein. (256 aa)
	SRPK1	SRSF protein kinase 1. (698 aa)
	ENSUAMP00000012147	Uncharacterized protein. (248 aa)
	ENSUAMP00000013802	NTF2 domain-containing protein. (515 aa)
	ENSUAMP00000014066	RRM domain-containing protein. (273 aa)
	ENSUAMP00000014226	RRM domain-containing protein. (148 aa)
	SRSF2	RRM domain-containing protein. (221 aa)
	SRSF5	Serine and arginine rich splicing factor 5. (272 aa)
	SRSF9	Serine and arginine rich splicing factor 9. (221 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (156 aa)
	ENSUAMP00000032859	Uncharacterized protein. (137 aa)
	ENSUAMP00000035008	RRM domain-containing protein. (184 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSUAMP00000010189	ENSUAMP00000010191	ENSUAMP00000010189	ENSUAMP00000010191	RRM domain-containing protein.	Uncharacterized protein.	0.899
ENSUAMP00000010189	ENSUAMP00000012147	ENSUAMP00000010189	ENSUAMP00000012147	RRM domain-containing protein.	Uncharacterized protein.	0.819
ENSUAMP00000010189	ENSUAMP00000014066	ENSUAMP00000010189	ENSUAMP00000014066	RRM domain-containing protein.	RRM domain-containing protein.	0.654
ENSUAMP00000010189	ENSUAMP00000014226	ENSUAMP00000010189	ENSUAMP00000014226	RRM domain-containing protein.	RRM domain-containing protein.	0.815
ENSUAMP00000010189	ENSUAMP00000032859	ENSUAMP00000010189	ENSUAMP00000032859	RRM domain-containing protein.	Uncharacterized protein.	0.815
ENSUAMP00000010189	ENSUAMP00000035008	ENSUAMP00000010189	ENSUAMP00000035008	RRM domain-containing protein.	RRM domain-containing protein.	0.654
ENSUAMP00000010189	SRPK1	ENSUAMP00000010189	ENSUAMP00000011726	RRM domain-containing protein.	SRSF protein kinase 1.	0.503
ENSUAMP00000010189	SRSF2	ENSUAMP00000010189	ENSUAMP00000016880	RRM domain-containing protein.	RRM domain-containing protein.	0.773
ENSUAMP00000010189	SRSF3	ENSUAMP00000010189	ENSUAMP00000023020	RRM domain-containing protein.	Serine and arginine rich splicing factor 3.	0.811
ENSUAMP00000010189	SRSF4	ENSUAMP00000010189	ENSUAMP00000006976	RRM domain-containing protein.	Serine and arginine rich splicing factor 4.	0.822
ENSUAMP00000010189	SRSF5	ENSUAMP00000010189	ENSUAMP00000017875	RRM domain-containing protein.	Serine and arginine rich splicing factor 5.	0.836
ENSUAMP00000010189	SRSF6	ENSUAMP00000010189	ENSUAMP00000003862	RRM domain-containing protein.	Serine and arginine rich splicing factor 6.	0.793
ENSUAMP00000010189	SRSF9	ENSUAMP00000010189	ENSUAMP00000019619	RRM domain-containing protein.	Serine and arginine rich splicing factor 9.	0.866
ENSUAMP00000010189	TRA2B	ENSUAMP00000010189	ENSUAMP00000000688	RRM domain-containing protein.	Transformer 2 beta homolog.	0.610
ENSUAMP00000010191	ENSUAMP00000010189	ENSUAMP00000010191	ENSUAMP00000010189	Uncharacterized protein.	RRM domain-containing protein.	0.899
ENSUAMP00000010191	ENSUAMP00000012147	ENSUAMP00000010191	ENSUAMP00000012147	Uncharacterized protein.	Uncharacterized protein.	0.819
ENSUAMP00000010191	ENSUAMP00000014066	ENSUAMP00000010191	ENSUAMP00000014066	Uncharacterized protein.	RRM domain-containing protein.	0.654
ENSUAMP00000010191	ENSUAMP00000014226	ENSUAMP00000010191	ENSUAMP00000014226	Uncharacterized protein.	RRM domain-containing protein.	0.815
ENSUAMP00000010191	ENSUAMP00000032859	ENSUAMP00000010191	ENSUAMP00000032859	Uncharacterized protein.	Uncharacterized protein.	0.815
ENSUAMP00000010191	ENSUAMP00000035008	ENSUAMP00000010191	ENSUAMP00000035008	Uncharacterized protein.	RRM domain-containing protein.	0.654