15 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PABPC4L	Poly(A) binding protein cytoplasmic 4 like. (370 aa)
	ZC3H14	Zinc finger CCCH-type containing 14. (733 aa)
	KHDRBS1	KH RNA binding domain containing, signal transduction associated 1. (443 aa)
	ENSUAMP00000016276	Uncharacterized protein; Belongs to the DEAD box helicase family. (661 aa)
	DDX3X	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family. (675 aa)
	ELAVL4	ELAV-like protein; Belongs to the RRM elav family. (402 aa)
	PABPC5	Poly(A) binding protein cytoplasmic 5. (382 aa)
	LARP4	La ribonucleoprotein domain family member 4. (566 aa)
	DDX1	DEAD-box helicase 1. (518 aa)
	RBMS2	RNA binding motif single stranded interacting protein 2. (396 aa)
	RBMS1	RNA binding motif single stranded interacting protein 1. (418 aa)
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (825 aa)
	ENSUAMP00000030296	Pan3_PK domain-containing protein. (397 aa)
	ENSUAMP00000035832	Qua1 domain-containing protein. (74 aa)
	EIF4A3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX1	ELAVL4	ENSUAMP00000022852	ENSUAMP00000017024	DEAD-box helicase 1.	ELAV-like protein; Belongs to the RRM elav family.	0.580
DDX3X	LARP4	ENSUAMP00000016569	ENSUAMP00000017770	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	La ribonucleoprotein domain family member 4.	0.401
DDX3X	PABPC4L	ENSUAMP00000016569	ENSUAMP00000001345	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	Poly(A) binding protein cytoplasmic 4 like.	0.437
EIF4A3	ENSUAMP00000030296	ENSUAMP00000036219	ENSUAMP00000030296	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Pan3_PK domain-containing protein.	0.593
EIF4A3	PABPC4L	ENSUAMP00000036219	ENSUAMP00000001345	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Poly(A) binding protein cytoplasmic 4 like.	0.652
EIF4A3	PABPC5	ENSUAMP00000036219	ENSUAMP00000017175	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Poly(A) binding protein cytoplasmic 5.	0.565
ELAVL4	DDX1	ENSUAMP00000017024	ENSUAMP00000022852	ELAV-like protein; Belongs to the RRM elav family.	DEAD-box helicase 1.	0.580
ENSUAMP00000016276	PABPC4L	ENSUAMP00000016276	ENSUAMP00000001345	Uncharacterized protein; Belongs to the DEAD box helicase family.	Poly(A) binding protein cytoplasmic 4 like.	0.437
ENSUAMP00000030296	EIF4A3	ENSUAMP00000030296	ENSUAMP00000036219	Pan3_PK domain-containing protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.593
ENSUAMP00000030296	PABPC4L	ENSUAMP00000030296	ENSUAMP00000001345	Pan3_PK domain-containing protein.	Poly(A) binding protein cytoplasmic 4 like.	0.840
ENSUAMP00000030296	PABPC5	ENSUAMP00000030296	ENSUAMP00000017175	Pan3_PK domain-containing protein.	Poly(A) binding protein cytoplasmic 5.	0.711
ENSUAMP00000035832	HNRNPU	ENSUAMP00000035832	ENSUAMP00000029057	Qua1 domain-containing protein.	Heterogeneous nuclear ribonucleoprotein U.	0.468
ENSUAMP00000035832	RBMS2	ENSUAMP00000035832	ENSUAMP00000027905	Qua1 domain-containing protein.	RNA binding motif single stranded interacting protein 2.	0.440
HNRNPU	ENSUAMP00000035832	ENSUAMP00000029057	ENSUAMP00000035832	Heterogeneous nuclear ribonucleoprotein U.	Qua1 domain-containing protein.	0.468
HNRNPU	KHDRBS1	ENSUAMP00000029057	ENSUAMP00000011206	Heterogeneous nuclear ribonucleoprotein U.	KH RNA binding domain containing, signal transduction associated 1.	0.468
HNRNPU	RBMS2	ENSUAMP00000029057	ENSUAMP00000027905	Heterogeneous nuclear ribonucleoprotein U.	RNA binding motif single stranded interacting protein 2.	0.530
KHDRBS1	HNRNPU	ENSUAMP00000011206	ENSUAMP00000029057	KH RNA binding domain containing, signal transduction associated 1.	Heterogeneous nuclear ribonucleoprotein U.	0.468
KHDRBS1	RBMS2	ENSUAMP00000011206	ENSUAMP00000027905	KH RNA binding domain containing, signal transduction associated 1.	RNA binding motif single stranded interacting protein 2.	0.440
LARP4	DDX3X	ENSUAMP00000017770	ENSUAMP00000016569	La ribonucleoprotein domain family member 4.	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	0.401
LARP4	PABPC4L	ENSUAMP00000017770	ENSUAMP00000001345	La ribonucleoprotein domain family member 4.	Poly(A) binding protein cytoplasmic 4 like.	0.448