(6 nodes) arachidonate-CoA ligase activity network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSUAMP00000000674	Uncharacterized protein. (258 aa)
	SLC27A1	Solute carrier family 27 member 1. (646 aa)
	ACSL4	Acyl-CoA synthetase long chain family member 4. (515 aa)
	ENSUAMP00000026668	Uncharacterized protein. (112 aa)
	ACSL1	Acyl-CoA synthetase long chain family member 1. (436 aa)
	ENSUAMP00000018915	AMP-binding domain-containing protein. (730 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSL1	ACSL4	ENSUAMP00000023994	ENSUAMP00000036104	Acyl-CoA synthetase long chain family member 1.	Acyl-CoA synthetase long chain family member 4.	0.903
ACSL1	ENSUAMP00000000674	ENSUAMP00000023994	ENSUAMP00000000674	Acyl-CoA synthetase long chain family member 1.	Uncharacterized protein.	0.880
ACSL1	ENSUAMP00000018915	ENSUAMP00000023994	ENSUAMP00000018915	Acyl-CoA synthetase long chain family member 1.	AMP-binding domain-containing protein.	0.878
ACSL1	ENSUAMP00000026668	ENSUAMP00000023994	ENSUAMP00000026668	Acyl-CoA synthetase long chain family member 1.	Uncharacterized protein.	0.868
ACSL1	SLC27A1	ENSUAMP00000023994	ENSUAMP00000001636	Acyl-CoA synthetase long chain family member 1.	Solute carrier family 27 member 1.	0.561
ACSL4	ACSL1	ENSUAMP00000036104	ENSUAMP00000023994	Acyl-CoA synthetase long chain family member 4.	Acyl-CoA synthetase long chain family member 1.	0.903
ACSL4	ENSUAMP00000000674	ENSUAMP00000036104	ENSUAMP00000000674	Acyl-CoA synthetase long chain family member 4.	Uncharacterized protein.	0.937
ACSL4	ENSUAMP00000018915	ENSUAMP00000036104	ENSUAMP00000018915	Acyl-CoA synthetase long chain family member 4.	AMP-binding domain-containing protein.	0.926
ACSL4	ENSUAMP00000026668	ENSUAMP00000036104	ENSUAMP00000026668	Acyl-CoA synthetase long chain family member 4.	Uncharacterized protein.	0.902
ENSUAMP00000000674	ACSL1	ENSUAMP00000000674	ENSUAMP00000023994	Uncharacterized protein.	Acyl-CoA synthetase long chain family member 1.	0.880
ENSUAMP00000000674	ACSL4	ENSUAMP00000000674	ENSUAMP00000036104	Uncharacterized protein.	Acyl-CoA synthetase long chain family member 4.	0.937
ENSUAMP00000000674	ENSUAMP00000018915	ENSUAMP00000000674	ENSUAMP00000018915	Uncharacterized protein.	AMP-binding domain-containing protein.	0.914
ENSUAMP00000000674	ENSUAMP00000026668	ENSUAMP00000000674	ENSUAMP00000026668	Uncharacterized protein.	Uncharacterized protein.	0.980
ENSUAMP00000000674	SLC27A1	ENSUAMP00000000674	ENSUAMP00000001636	Uncharacterized protein.	Solute carrier family 27 member 1.	0.415
ENSUAMP00000018915	ACSL1	ENSUAMP00000018915	ENSUAMP00000023994	AMP-binding domain-containing protein.	Acyl-CoA synthetase long chain family member 1.	0.878
ENSUAMP00000018915	ACSL4	ENSUAMP00000018915	ENSUAMP00000036104	AMP-binding domain-containing protein.	Acyl-CoA synthetase long chain family member 4.	0.926
ENSUAMP00000018915	ENSUAMP00000000674	ENSUAMP00000018915	ENSUAMP00000000674	AMP-binding domain-containing protein.	Uncharacterized protein.	0.914
ENSUAMP00000018915	ENSUAMP00000026668	ENSUAMP00000018915	ENSUAMP00000026668	AMP-binding domain-containing protein.	Uncharacterized protein.	0.876
ENSUAMP00000026668	ACSL1	ENSUAMP00000026668	ENSUAMP00000023994	Uncharacterized protein.	Acyl-CoA synthetase long chain family member 1.	0.868
ENSUAMP00000026668	ACSL4	ENSUAMP00000026668	ENSUAMP00000036104	Uncharacterized protein.	Acyl-CoA synthetase long chain family member 4.	0.902