(8 nodes) Death domain binding network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSUAMP00000006064	Uncharacterized protein. (80 aa)
	ENSUAMP00000006350	Uncharacterized protein. (85 aa)
	DAPL1	Death associated protein like 1. (101 aa)
	BAX	BCL2 associated X, apoptosis regulator. (205 aa)
	RIPK1	Receptor interacting serine/threonine kinase 1. (550 aa)
	TRADD	TNFRSF1A associated via death domain. (314 aa)
	RACK1	Receptor for activated C kinase 1. (374 aa)
	ENSUAMP00000033323	CARD domain-containing protein. (221 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAPL1	ENSUAMP00000006064	ENSUAMP00000011101	ENSUAMP00000006064	Death associated protein like 1.	Uncharacterized protein.	0.595
DAPL1	ENSUAMP00000006350	ENSUAMP00000011101	ENSUAMP00000006350	Death associated protein like 1.	Uncharacterized protein.	0.595
DAPL1	RACK1	ENSUAMP00000011101	ENSUAMP00000020067	Death associated protein like 1.	Receptor for activated C kinase 1.	0.595
ENSUAMP00000006064	DAPL1	ENSUAMP00000006064	ENSUAMP00000011101	Uncharacterized protein.	Death associated protein like 1.	0.595
ENSUAMP00000006350	DAPL1	ENSUAMP00000006350	ENSUAMP00000011101	Uncharacterized protein.	Death associated protein like 1.	0.595
ENSUAMP00000033323	TRADD	ENSUAMP00000033323	ENSUAMP00000019860	CARD domain-containing protein.	TNFRSF1A associated via death domain.	0.450
RACK1	DAPL1	ENSUAMP00000020067	ENSUAMP00000011101	Receptor for activated C kinase 1.	Death associated protein like 1.	0.595
RIPK1	TRADD	ENSUAMP00000019468	ENSUAMP00000019860	Receptor interacting serine/threonine kinase 1.	TNFRSF1A associated via death domain.	0.999
TRADD	ENSUAMP00000033323	ENSUAMP00000019860	ENSUAMP00000033323	TNFRSF1A associated via death domain.	CARD domain-containing protein.	0.450
TRADD	RIPK1	ENSUAMP00000019860	ENSUAMP00000019468	TNFRSF1A associated via death domain.	Receptor interacting serine/threonine kinase 1.	0.999