10 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	C3orf49	Chromosome 3 open reading frame 49. (292 aa)
	C19orf54	Chromosome 19 open reading frame 54. (346 aa)
	LSM7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
	DDX39A	DExD-box helicase 39A. (427 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (114 aa)
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (122 aa)
	DDX39B	DExD-box helicase 39B. (412 aa)
	ZNF608	Zinc finger protein 608. (1514 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	LSM8-2	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C19orf54	DDX39A	ENSUAMP00000003268	ENSUAMP00000025769	Chromosome 19 open reading frame 54.	DExD-box helicase 39A.	0.457
C19orf54	DDX39B	ENSUAMP00000003268	ENSUAMP00000036056	Chromosome 19 open reading frame 54.	DExD-box helicase 39B.	0.457
C19orf54	LSM6	ENSUAMP00000003268	ENSUAMP00000017905	Chromosome 19 open reading frame 54.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.972
C19orf54	LSM7	ENSUAMP00000003268	ENSUAMP00000000925	Chromosome 19 open reading frame 54.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.964
C19orf54	LSM8	ENSUAMP00000003268	ENSUAMP00000008123	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.918
C19orf54	LSM8-2	ENSUAMP00000003268	ENSUAMP00000008124	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.918
DDX39A	C19orf54	ENSUAMP00000025769	ENSUAMP00000003268	DExD-box helicase 39A.	Chromosome 19 open reading frame 54.	0.457
DDX39A	LSM3	ENSUAMP00000025769	ENSUAMP00000021919	DExD-box helicase 39A.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.457
DDX39A	LSM6	ENSUAMP00000025769	ENSUAMP00000017905	DExD-box helicase 39A.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.432
DDX39A	LSM7	ENSUAMP00000025769	ENSUAMP00000000925	DExD-box helicase 39A.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.523
DDX39B	C19orf54	ENSUAMP00000036056	ENSUAMP00000003268	DExD-box helicase 39B.	Chromosome 19 open reading frame 54.	0.457
DDX39B	LSM3	ENSUAMP00000036056	ENSUAMP00000021919	DExD-box helicase 39B.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.638
DDX39B	LSM6	ENSUAMP00000036056	ENSUAMP00000017905	DExD-box helicase 39B.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.432
DDX39B	LSM7	ENSUAMP00000036056	ENSUAMP00000000925	DExD-box helicase 39B.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.523
DDX39B	LSM8	ENSUAMP00000036056	ENSUAMP00000008123	DExD-box helicase 39B.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.484
DDX39B	LSM8-2	ENSUAMP00000036056	ENSUAMP00000008124	DExD-box helicase 39B.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.484
LSM3	DDX39A	ENSUAMP00000021919	ENSUAMP00000025769	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DExD-box helicase 39A.	0.457
LSM3	DDX39B	ENSUAMP00000021919	ENSUAMP00000036056	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DExD-box helicase 39B.	0.638
LSM3	LSM6	ENSUAMP00000021919	ENSUAMP00000017905	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM3	LSM7	ENSUAMP00000021919	ENSUAMP00000000925	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998