(23 nodes) SANT domain network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MIER1	MIER1 transcriptional regulator. (461 aa)
	TRERF1	Transcriptional regulating factor 1. (1157 aa)
	ENSUAMP00000004936	Uncharacterized protein. (777 aa)
	MIER3	MIER family member 3. (498 aa)
	MYSM1	Myb like, SWIRM and MPN domains 1. (812 aa)
	TADA2A	Transcriptional adapter. (443 aa)
	SNAPC4	Small nuclear RNA activating complex polypeptide 4. (1432 aa)
	MTA1	Metastasis associated 1. (741 aa)
	RCOR2	REST corepressor 2. (537 aa)
	ENSUAMP00000019448	SANT domain-containing protein. (719 aa)
	MIER2	MIER family member 2. (526 aa)
	DNAJC1	DnaJ heat shock protein family (Hsp40) member C1. (562 aa)
	MTA3	Metastasis associated 1 family member 3. (589 aa)
	RCOR1	REST corepressor 1. (397 aa)
	ENSUAMP00000025103	Uncharacterized protein. (286 aa)
	NCOR1	Nuclear receptor corepressor 1. (2267 aa)
	RERE	Arginine-glutamic acid dipeptide repeats. (1309 aa)
	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1058 aa)
	TADA2B	Transcriptional adapter. (420 aa)
	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1047 aa)
	NCOR2	Nuclear receptor corepressor 2. (2465 aa)
	ELMSAN1	ELM2 and Myb/SANT domain containing 1. (1109 aa)
	MTA2	Metastasis associated 1 family member 2. (668 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNAJC1	MIER1	ENSUAMP00000020190	ENSUAMP00000026318	DnaJ heat shock protein family (Hsp40) member C1.	MIER1 transcriptional regulator.	0.510
ELMSAN1	TRERF1	ENSUAMP00000031916	ENSUAMP00000000512	ELM2 and Myb/SANT domain containing 1.	Transcriptional regulating factor 1.	0.693
ENSUAMP00000004936	ENSUAMP00000019448	ENSUAMP00000004936	ENSUAMP00000019448	Uncharacterized protein.	SANT domain-containing protein.	0.401
ENSUAMP00000004936	SMARCA1	ENSUAMP00000004936	ENSUAMP00000026015	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.479
ENSUAMP00000004936	SMARCA5	ENSUAMP00000004936	ENSUAMP00000030601	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.669
ENSUAMP00000019448	ENSUAMP00000004936	ENSUAMP00000019448	ENSUAMP00000004936	SANT domain-containing protein.	Uncharacterized protein.	0.401
ENSUAMP00000019448	SMARCA1	ENSUAMP00000019448	ENSUAMP00000026015	SANT domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.479
ENSUAMP00000019448	SMARCA5	ENSUAMP00000019448	ENSUAMP00000030601	SANT domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.669
MIER1	DNAJC1	ENSUAMP00000026318	ENSUAMP00000020190	MIER1 transcriptional regulator.	DnaJ heat shock protein family (Hsp40) member C1.	0.510
MTA1	MTA2	ENSUAMP00000012686	ENSUAMP00000035906	Metastasis associated 1.	Metastasis associated 1 family member 2.	0.901
MTA1	MTA3	ENSUAMP00000012686	ENSUAMP00000022386	Metastasis associated 1.	Metastasis associated 1 family member 3.	0.796
MTA1	RCOR1	ENSUAMP00000012686	ENSUAMP00000024042	Metastasis associated 1.	REST corepressor 1.	0.599
MTA1	RCOR2	ENSUAMP00000012686	ENSUAMP00000019287	Metastasis associated 1.	REST corepressor 2.	0.426
MTA2	MTA1	ENSUAMP00000035906	ENSUAMP00000012686	Metastasis associated 1 family member 2.	Metastasis associated 1.	0.901
MTA2	MTA3	ENSUAMP00000035906	ENSUAMP00000022386	Metastasis associated 1 family member 2.	Metastasis associated 1 family member 3.	0.806
MTA2	RCOR1	ENSUAMP00000035906	ENSUAMP00000024042	Metastasis associated 1 family member 2.	REST corepressor 1.	0.638
MTA2	RCOR2	ENSUAMP00000035906	ENSUAMP00000019287	Metastasis associated 1 family member 2.	REST corepressor 2.	0.426
MTA3	MTA1	ENSUAMP00000022386	ENSUAMP00000012686	Metastasis associated 1 family member 3.	Metastasis associated 1.	0.796
MTA3	MTA2	ENSUAMP00000022386	ENSUAMP00000035906	Metastasis associated 1 family member 3.	Metastasis associated 1 family member 2.	0.806
MTA3	RCOR1	ENSUAMP00000022386	ENSUAMP00000024042	Metastasis associated 1 family member 3.	REST corepressor 1.	0.595