11 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSUAMP00000025103	Uncharacterized protein. (286 aa)
	MYBL1	MYB proto-oncogene like 1. (786 aa)
	NCOR2	Nuclear receptor corepressor 2. (2465 aa)
	MYBL2	MYB proto-oncogene like 2. (699 aa)
	ENSUAMP00000016862	Uncharacterized protein. (903 aa)
	SNAPC4	Small nuclear RNA activating complex polypeptide 4. (1432 aa)
	TADA2A	Transcriptional adapter. (443 aa)
	MYB	MYB proto-oncogene, transcription factor. (727 aa)
	DMTF1	Cyclin D binding myb like transcription factor 1. (762 aa)
	NCOR1	Nuclear receptor corepressor 1. (2267 aa)
	MYSM1	Myb like, SWIRM and MPN domains 1. (812 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMTF1	TADA2A	ENSUAMP00000005391	ENSUAMP00000009859	Cyclin D binding myb like transcription factor 1.	Transcriptional adapter.	0.459
ENSUAMP00000016862	TADA2A	ENSUAMP00000016862	ENSUAMP00000009859	Uncharacterized protein.	Transcriptional adapter.	0.954
NCOR1	NCOR2	ENSUAMP00000025256	ENSUAMP00000030789	Nuclear receptor corepressor 1.	Nuclear receptor corepressor 2.	0.905
NCOR1	TADA2A	ENSUAMP00000025256	ENSUAMP00000009859	Nuclear receptor corepressor 1.	Transcriptional adapter.	0.663
NCOR2	NCOR1	ENSUAMP00000030789	ENSUAMP00000025256	Nuclear receptor corepressor 2.	Nuclear receptor corepressor 1.	0.905
NCOR2	TADA2A	ENSUAMP00000030789	ENSUAMP00000009859	Nuclear receptor corepressor 2.	Transcriptional adapter.	0.663
TADA2A	DMTF1	ENSUAMP00000009859	ENSUAMP00000005391	Transcriptional adapter.	Cyclin D binding myb like transcription factor 1.	0.459
TADA2A	ENSUAMP00000016862	ENSUAMP00000009859	ENSUAMP00000016862	Transcriptional adapter.	Uncharacterized protein.	0.954
TADA2A	NCOR1	ENSUAMP00000009859	ENSUAMP00000025256	Transcriptional adapter.	Nuclear receptor corepressor 1.	0.663
TADA2A	NCOR2	ENSUAMP00000009859	ENSUAMP00000030789	Transcriptional adapter.	Nuclear receptor corepressor 2.	0.663