(7 nodes) Ubiquitin conserved site network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBL4A	Ubiquitin like 4A. (168 aa)
	UBL4B	Ubiquitin like 4B. (154 aa)
	NEDD8	NEDD8 ubiquitin like modifier. (81 aa)
	BAG6	BCL2 associated athanogene 6. (1164 aa)
	UBFD1	Ubiquitin family domain containing 1. (347 aa)
	ENSUAMP00000025192	Ubiquitin-like domain-containing protein. (156 aa)
	ENSUAMP00000000952	Ubiquitin-like domain-containing protein. (96 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	UBL4A	ENSUAMP00000015560	ENSUAMP00000014342	BCL2 associated athanogene 6.	Ubiquitin like 4A.	0.917
BAG6	UBL4B	ENSUAMP00000015560	ENSUAMP00000032910	BCL2 associated athanogene 6.	Ubiquitin like 4B.	0.876
ENSUAMP00000000952	ENSUAMP00000025192	ENSUAMP00000000952	ENSUAMP00000025192	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.983
ENSUAMP00000000952	NEDD8	ENSUAMP00000000952	ENSUAMP00000031890	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.869
ENSUAMP00000000952	UBFD1	ENSUAMP00000000952	ENSUAMP00000021538	Ubiquitin-like domain-containing protein.	Ubiquitin family domain containing 1.	0.685
ENSUAMP00000000952	UBL4A	ENSUAMP00000000952	ENSUAMP00000014342	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.615
ENSUAMP00000000952	UBL4B	ENSUAMP00000000952	ENSUAMP00000032910	Ubiquitin-like domain-containing protein.	Ubiquitin like 4B.	0.615
ENSUAMP00000025192	ENSUAMP00000000952	ENSUAMP00000025192	ENSUAMP00000000952	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.983
ENSUAMP00000025192	NEDD8	ENSUAMP00000025192	ENSUAMP00000031890	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier.	0.946
ENSUAMP00000025192	UBFD1	ENSUAMP00000025192	ENSUAMP00000021538	Ubiquitin-like domain-containing protein.	Ubiquitin family domain containing 1.	0.893
ENSUAMP00000025192	UBL4A	ENSUAMP00000025192	ENSUAMP00000014342	Ubiquitin-like domain-containing protein.	Ubiquitin like 4A.	0.722
ENSUAMP00000025192	UBL4B	ENSUAMP00000025192	ENSUAMP00000032910	Ubiquitin-like domain-containing protein.	Ubiquitin like 4B.	0.722
NEDD8	ENSUAMP00000000952	ENSUAMP00000031890	ENSUAMP00000000952	NEDD8 ubiquitin like modifier.	Ubiquitin-like domain-containing protein.	0.869
NEDD8	ENSUAMP00000025192	ENSUAMP00000031890	ENSUAMP00000025192	NEDD8 ubiquitin like modifier.	Ubiquitin-like domain-containing protein.	0.946
NEDD8	UBFD1	ENSUAMP00000031890	ENSUAMP00000021538	NEDD8 ubiquitin like modifier.	Ubiquitin family domain containing 1.	0.510
NEDD8	UBL4A	ENSUAMP00000031890	ENSUAMP00000014342	NEDD8 ubiquitin like modifier.	Ubiquitin like 4A.	0.503
NEDD8	UBL4B	ENSUAMP00000031890	ENSUAMP00000032910	NEDD8 ubiquitin like modifier.	Ubiquitin like 4B.	0.503
UBFD1	ENSUAMP00000000952	ENSUAMP00000021538	ENSUAMP00000000952	Ubiquitin family domain containing 1.	Ubiquitin-like domain-containing protein.	0.685
UBFD1	ENSUAMP00000025192	ENSUAMP00000021538	ENSUAMP00000025192	Ubiquitin family domain containing 1.	Ubiquitin-like domain-containing protein.	0.893
UBFD1	NEDD8	ENSUAMP00000021538	ENSUAMP00000031890	Ubiquitin family domain containing 1.	NEDD8 ubiquitin like modifier.	0.510