(8 nodes) Eukaryotic porin/Tom40 network (Ursus americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSUAMP00000034850	Uncharacterized protein. (294 aa)
	ENSUAMP00000003588	Uncharacterized protein. (58 aa)
	ENSUAMP00000000802	Uncharacterized protein. (67 aa)
	VDAC1	Voltage dependent anion channel 1. (283 aa)
	VDAC3	Voltage dependent anion channel 3. (279 aa)
	ENSUAMP00000023390	Uncharacterized protein. (286 aa)
	TOMM40	Translocase of outer mitochondrial membrane 40. (361 aa)
	TOMM40L	Translocase of outer mitochondrial membrane 40 like. (308 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSUAMP00000000802	ENSUAMP00000003588	ENSUAMP00000000802	ENSUAMP00000003588	Uncharacterized protein.	Uncharacterized protein.	0.547
ENSUAMP00000000802	ENSUAMP00000023390	ENSUAMP00000000802	ENSUAMP00000023390	Uncharacterized protein.	Uncharacterized protein.	0.949
ENSUAMP00000000802	ENSUAMP00000034850	ENSUAMP00000000802	ENSUAMP00000034850	Uncharacterized protein.	Uncharacterized protein.	0.949
ENSUAMP00000000802	TOMM40	ENSUAMP00000000802	ENSUAMP00000030577	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40.	0.569
ENSUAMP00000000802	TOMM40L	ENSUAMP00000000802	ENSUAMP00000033435	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40 like.	0.569
ENSUAMP00000000802	VDAC1	ENSUAMP00000000802	ENSUAMP00000007775	Uncharacterized protein.	Voltage dependent anion channel 1.	0.955
ENSUAMP00000000802	VDAC3	ENSUAMP00000000802	ENSUAMP00000020593	Uncharacterized protein.	Voltage dependent anion channel 3.	0.540
ENSUAMP00000003588	ENSUAMP00000000802	ENSUAMP00000003588	ENSUAMP00000000802	Uncharacterized protein.	Uncharacterized protein.	0.547
ENSUAMP00000003588	ENSUAMP00000023390	ENSUAMP00000003588	ENSUAMP00000023390	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSUAMP00000003588	ENSUAMP00000034850	ENSUAMP00000003588	ENSUAMP00000034850	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSUAMP00000003588	TOMM40	ENSUAMP00000003588	ENSUAMP00000030577	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40.	0.493
ENSUAMP00000003588	TOMM40L	ENSUAMP00000003588	ENSUAMP00000033435	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40 like.	0.493
ENSUAMP00000003588	VDAC3	ENSUAMP00000003588	ENSUAMP00000020593	Uncharacterized protein.	Voltage dependent anion channel 3.	0.540
ENSUAMP00000023390	ENSUAMP00000000802	ENSUAMP00000023390	ENSUAMP00000000802	Uncharacterized protein.	Uncharacterized protein.	0.949
ENSUAMP00000023390	ENSUAMP00000003588	ENSUAMP00000023390	ENSUAMP00000003588	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSUAMP00000023390	ENSUAMP00000034850	ENSUAMP00000023390	ENSUAMP00000034850	Uncharacterized protein.	Uncharacterized protein.	0.543
ENSUAMP00000023390	TOMM40	ENSUAMP00000023390	ENSUAMP00000030577	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40.	0.569
ENSUAMP00000023390	TOMM40L	ENSUAMP00000023390	ENSUAMP00000033435	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40 like.	0.569
ENSUAMP00000023390	VDAC1	ENSUAMP00000023390	ENSUAMP00000007775	Uncharacterized protein.	Voltage dependent anion channel 1.	0.979
ENSUAMP00000023390	VDAC3	ENSUAMP00000023390	ENSUAMP00000020593	Uncharacterized protein.	Voltage dependent anion channel 3.	0.953