16 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBX20	T-box transcription factor 20. (448 aa)
	TBX22	T-box transcription factor 22. (524 aa)
	TBX18	T-box transcription factor 18. (612 aa)
	TBX1	T-box transcription factor 1. (464 aa)
	TBX10	T-box transcription factor 10. (388 aa)
	TBX19	T-box transcription factor 19. (444 aa)
	TBX5	T-box transcription factor 5. (517 aa)
	ENSUAMP00000000600	Uncharacterized protein. (130 aa)
	TBX4	T-box transcription factor 4. (529 aa)
	TBX2	T-box transcription factor 2. (697 aa)
	EOMES	Eomesodermin. (687 aa)
	ENSUAMP00000027699	Uncharacterized protein. (214 aa)
	TBXT	T-box transcription factor T. (435 aa)
	TBX6	T-box transcription factor 6. (436 aa)
	MGA	MAX dimerization protein MGA. (3115 aa)
	TBR1	T-box brain transcription factor 1. (682 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSUAMP00000000600	ENSUAMP00000027699	ENSUAMP00000000600	ENSUAMP00000027699	Uncharacterized protein.	Uncharacterized protein.	0.406
ENSUAMP00000027699	ENSUAMP00000000600	ENSUAMP00000027699	ENSUAMP00000000600	Uncharacterized protein.	Uncharacterized protein.	0.406
EOMES	TBX19	ENSUAMP00000036778	ENSUAMP00000009515	Eomesodermin.	T-box transcription factor 19.	0.542
EOMES	TBXT	ENSUAMP00000036778	ENSUAMP00000029000	Eomesodermin.	T-box transcription factor T.	0.554
TBR1	TBX19	ENSUAMP00000026057	ENSUAMP00000009515	T-box brain transcription factor 1.	T-box transcription factor 19.	0.484
TBR1	TBXT	ENSUAMP00000026057	ENSUAMP00000029000	T-box brain transcription factor 1.	T-box transcription factor T.	0.568
TBX10	TBX19	ENSUAMP00000012075	ENSUAMP00000009515	T-box transcription factor 10.	T-box transcription factor 19.	0.435
TBX10	TBXT	ENSUAMP00000012075	ENSUAMP00000029000	T-box transcription factor 10.	T-box transcription factor T.	0.435
TBX19	EOMES	ENSUAMP00000009515	ENSUAMP00000036778	T-box transcription factor 19.	Eomesodermin.	0.542
TBX19	TBR1	ENSUAMP00000009515	ENSUAMP00000026057	T-box transcription factor 19.	T-box brain transcription factor 1.	0.484
TBX19	TBX10	ENSUAMP00000009515	ENSUAMP00000012075	T-box transcription factor 19.	T-box transcription factor 10.	0.435
TBX19	TBX6	ENSUAMP00000009515	ENSUAMP00000031509	T-box transcription factor 19.	T-box transcription factor 6.	0.426
TBX6	TBX19	ENSUAMP00000031509	ENSUAMP00000009515	T-box transcription factor 6.	T-box transcription factor 19.	0.426
TBX6	TBXT	ENSUAMP00000031509	ENSUAMP00000029000	T-box transcription factor 6.	T-box transcription factor T.	0.412
TBXT	EOMES	ENSUAMP00000029000	ENSUAMP00000036778	T-box transcription factor T.	Eomesodermin.	0.554
TBXT	TBR1	ENSUAMP00000029000	ENSUAMP00000026057	T-box transcription factor T.	T-box brain transcription factor 1.	0.568
TBXT	TBX10	ENSUAMP00000029000	ENSUAMP00000012075	T-box transcription factor T.	T-box transcription factor 10.	0.435
TBXT	TBX6	ENSUAMP00000029000	ENSUAMP00000031509	T-box transcription factor T.	T-box transcription factor 6.	0.412