20 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (122 aa)
	DDX6	DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
	ENSUAMP00000035166	Uncharacterized protein. (508 aa)
	ENSUAMP00000029070	Uncharacterized protein. (211 aa)
	EDC4	Enhancer of mRNA decapping 4. (1469 aa)
	PATL2	PAT1 homolog 2. (547 aa)
	ENSUAMP00000022308	Uncharacterized protein. (413 aa)
	ENSUAMP00000022295	Uncharacterized protein. (119 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (114 aa)
	LSM5	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
	PATL1	PAT1 homolog 1, processing body mRNA decay factor. (430 aa)
	DCP1A	Decapping mRNA 1A. (580 aa)
	ENSUAMP00000006467	Uncharacterized protein. (310 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
	C19orf54	Chromosome 19 open reading frame 54. (346 aa)
	ENSUAMP00000003208	Uncharacterized protein. (57 aa)
	ENSUAMP00000003041	LSM14 domain-containing protein. (55 aa)
	LSM7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
	ENSUAMP00000000094	DCP2 domain-containing protein. (74 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C19orf54	DCP1A	ENSUAMP00000003268	ENSUAMP00000008816	Chromosome 19 open reading frame 54.	Decapping mRNA 1A.	0.554
C19orf54	DDX6	ENSUAMP00000003268	ENSUAMP00000036632	Chromosome 19 open reading frame 54.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.787
C19orf54	EDC4	ENSUAMP00000003268	ENSUAMP00000027120	Chromosome 19 open reading frame 54.	Enhancer of mRNA decapping 4.	0.605
C19orf54	ENSUAMP00000000094	ENSUAMP00000003268	ENSUAMP00000000094	Chromosome 19 open reading frame 54.	DCP2 domain-containing protein.	0.688
C19orf54	ENSUAMP00000003041	ENSUAMP00000003268	ENSUAMP00000003041	Chromosome 19 open reading frame 54.	LSM14 domain-containing protein.	0.607
C19orf54	ENSUAMP00000003208	ENSUAMP00000003268	ENSUAMP00000003208	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.949
C19orf54	ENSUAMP00000006467	ENSUAMP00000003268	ENSUAMP00000006467	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.711
C19orf54	ENSUAMP00000022295	ENSUAMP00000003268	ENSUAMP00000022295	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.554
C19orf54	ENSUAMP00000022308	ENSUAMP00000003268	ENSUAMP00000022308	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.554
C19orf54	ENSUAMP00000029070	ENSUAMP00000003268	ENSUAMP00000029070	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.688
C19orf54	ENSUAMP00000035166	ENSUAMP00000003268	ENSUAMP00000035166	Chromosome 19 open reading frame 54.	Uncharacterized protein.	0.607
C19orf54	LSM1	ENSUAMP00000003268	ENSUAMP00000004477	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.963
C19orf54	LSM4	ENSUAMP00000003268	ENSUAMP00000000719	Chromosome 19 open reading frame 54.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.962
C19orf54	LSM5	ENSUAMP00000003268	ENSUAMP00000012056	Chromosome 19 open reading frame 54.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.949
C19orf54	LSM6	ENSUAMP00000003268	ENSUAMP00000017905	Chromosome 19 open reading frame 54.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.972
C19orf54	LSM7	ENSUAMP00000003268	ENSUAMP00000000925	Chromosome 19 open reading frame 54.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.964
C19orf54	PATL1	ENSUAMP00000003268	ENSUAMP00000012054	Chromosome 19 open reading frame 54.	PAT1 homolog 1, processing body mRNA decay factor.	0.899
C19orf54	PATL2	ENSUAMP00000003268	ENSUAMP00000023657	Chromosome 19 open reading frame 54.	PAT1 homolog 2.	0.899
DCP1A	C19orf54	ENSUAMP00000008816	ENSUAMP00000003268	Decapping mRNA 1A.	Chromosome 19 open reading frame 54.	0.554
DCP1A	DDX6	ENSUAMP00000008816	ENSUAMP00000036632	Decapping mRNA 1A.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.995