55 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB26	RAB26, member RAS oncogene family. (255 aa)
	RAB6B	RAB6B, member RAS oncogene family. (191 aa)
	RAB2A	RAB2A, member RAS oncogene family. (166 aa)
	RAB12	RAB12, member RAS oncogene family. (244 aa)
	RAB8A	RAB8A, member RAS oncogene family. (207 aa)
	RAB25	RAB25, member RAS oncogene family. (211 aa)
	RAB1A	RAB1A, member RAS oncogene family. (210 aa)
	RAB5B	RAB5B, member RAS oncogene family. (215 aa)
	RAB19	RAB19, member RAS oncogene family. (217 aa)
	RAB8B	RAB8B, member RAS oncogene family. (188 aa)
	RAB23	RAB23, member RAS oncogene family. (237 aa)
	ENSUAMP00000014310	Uncharacterized protein. (213 aa)
	RAB36	RAB36, member RAS oncogene family. (333 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB10	RAB10, member RAS oncogene family. (194 aa)
	RAB42	RAB42, member RAS oncogene family. (220 aa)
	RAB22A	RAB22A, member RAS oncogene family. (192 aa)
	RAB38	RAB38, member RAS oncogene family. (211 aa)
	RAB32	RAB32, member RAS oncogene family. (223 aa)
	RAB35	RAB35, member RAS oncogene family. (239 aa)
	ENSUAMP00000007730	Uncharacterized protein. (206 aa)
	RAB34	RAB34, member RAS oncogene family. (259 aa)
	RAB39A	RAB39A, member RAS oncogene family. (217 aa)
	RAB15	RAB15, member RAS oncogene family. (166 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	RAB21	RAB21, member RAS oncogene family. (221 aa)
	RAB40B	RAB40B, member RAS oncogene family. (287 aa)
	RAB44	RAB44, member RAS oncogene family. (946 aa)
	ENSUAMP00000037135	Uncharacterized protein. (201 aa)
	RAB24	RAB24, member RAS oncogene family. (203 aa)
	RAB5A	RAB5A, member RAS oncogene family. (229 aa)
	RAB3A	RAB3A, member RAS oncogene family. (230 aa)
	ENSUAMP00000035617	Uncharacterized protein. (164 aa)
	ENSUAMP00000035616	Uncharacterized protein. (219 aa)
	RAB11A	RAB11A, member RAS oncogene family. (210 aa)
	RAB3B	RAB3B, member RAS oncogene family. (219 aa)
	RAB17	RAB17, member RAS oncogene family. (275 aa)
	ENSUAMP00000031858	Uncharacterized protein. (203 aa)
	ENSUAMP00000031800	Uncharacterized protein. (216 aa)
	RAB37	RAB37, member RAS oncogene family. (213 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	RAB33A	RAB33A, member RAS oncogene family. (237 aa)
	RAB9B	RAB9B, member RAS oncogene family. (201 aa)
	RAB29	RAB29, member RAS oncogene family. (203 aa)
	RAB7B	RAB7B, member RAS oncogene family. (200 aa)
	RAB33B	RAB33B, member RAS oncogene family. (229 aa)
	RASEF	RAS and EF-hand domain containing. (743 aa)
	CRACR2A	Calcium release activated channel regulator 2A. (707 aa)
	RAB1B	RAB1B, member RAS oncogene family. (201 aa)
	ENSUAMP00000027173	Uncharacterized protein. (201 aa)
	RAB27A	RAB27A, member RAS oncogene family. (221 aa)
	RAB40C	RAB40C, member RAS oncogene family. (281 aa)
	RAB43	RAB43, member RAS oncogene family. (212 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	RAB4A	RAB4A, member RAS oncogene family. (215 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRACR2A	RASEF	ENSUAMP00000027913	ENSUAMP00000027962	Calcium release activated channel regulator 2A.	RAS and EF-hand domain containing.	0.408
ENSUAMP00000007730	ENSUAMP00000027173	ENSUAMP00000007730	ENSUAMP00000027173	Uncharacterized protein.	Uncharacterized protein.	0.409
ENSUAMP00000007730	ENSUAMP00000031800	ENSUAMP00000007730	ENSUAMP00000031800	Uncharacterized protein.	Uncharacterized protein.	0.415
ENSUAMP00000007730	ENSUAMP00000031858	ENSUAMP00000007730	ENSUAMP00000031858	Uncharacterized protein.	Uncharacterized protein.	0.490
ENSUAMP00000007730	ENSUAMP00000035616	ENSUAMP00000007730	ENSUAMP00000035616	Uncharacterized protein.	Uncharacterized protein.	0.744
ENSUAMP00000007730	ENSUAMP00000035617	ENSUAMP00000007730	ENSUAMP00000035617	Uncharacterized protein.	Uncharacterized protein.	0.742
ENSUAMP00000007730	ENSUAMP00000037135	ENSUAMP00000007730	ENSUAMP00000037135	Uncharacterized protein.	Uncharacterized protein.	0.409
ENSUAMP00000007730	RAB10	ENSUAMP00000007730	ENSUAMP00000010872	Uncharacterized protein.	RAB10, member RAS oncogene family.	0.688
ENSUAMP00000007730	RAB14	ENSUAMP00000007730	ENSUAMP00000003436	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.633
ENSUAMP00000007730	RAB15	ENSUAMP00000007730	ENSUAMP00000004789	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.489
ENSUAMP00000007730	RAB17	ENSUAMP00000007730	ENSUAMP00000033757	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.428
ENSUAMP00000007730	RAB19	ENSUAMP00000007730	ENSUAMP00000017586	Uncharacterized protein.	RAB19, member RAS oncogene family.	0.512
ENSUAMP00000007730	RAB1A	ENSUAMP00000007730	ENSUAMP00000018509	Uncharacterized protein.	RAB1A, member RAS oncogene family.	0.723
ENSUAMP00000007730	RAB1B	ENSUAMP00000007730	ENSUAMP00000027245	Uncharacterized protein.	RAB1B, member RAS oncogene family.	0.717
ENSUAMP00000007730	RAB33A	ENSUAMP00000007730	ENSUAMP00000029916	Uncharacterized protein.	RAB33A, member RAS oncogene family.	0.482
ENSUAMP00000007730	RAB33B	ENSUAMP00000007730	ENSUAMP00000029422	Uncharacterized protein.	RAB33B, member RAS oncogene family.	0.487
ENSUAMP00000007730	RAB34	ENSUAMP00000007730	ENSUAMP00000005648	Uncharacterized protein.	RAB34, member RAS oncogene family.	0.451
ENSUAMP00000007730	RAB36	ENSUAMP00000007730	ENSUAMP00000013671	Uncharacterized protein.	RAB36, member RAS oncogene family.	0.455
ENSUAMP00000007730	RAB43	ENSUAMP00000007730	ENSUAMP00000024276	Uncharacterized protein.	RAB43, member RAS oncogene family.	0.506
ENSUAMP00000007730	RAB5A	ENSUAMP00000007730	ENSUAMP00000036243	Uncharacterized protein.	RAB5A, member RAS oncogene family.	0.417