15 items (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TBX20	T-box transcription factor 20. (448 aa)
	TBR1	T-box brain transcription factor 1. (682 aa)
	ENSUAMP00000027699	Uncharacterized protein. (214 aa)
	TBXT	T-box transcription factor T. (435 aa)
	MGA	MAX dimerization protein MGA. (3115 aa)
	TBX6	T-box transcription factor 6. (436 aa)
	EOMES	Eomesodermin. (687 aa)
	TBX4	T-box transcription factor 4. (529 aa)
	TBX2	T-box transcription factor 2. (697 aa)
	TBX5	T-box transcription factor 5. (517 aa)
	TBX19	T-box transcription factor 19. (444 aa)
	TBX10	T-box transcription factor 10. (388 aa)
	TBX1	T-box transcription factor 1. (464 aa)
	TBX18	T-box transcription factor 18. (612 aa)
	TBX22	T-box transcription factor 22. (524 aa)

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EOMES	TBX19	ENSUAMP00000036778	ENSUAMP00000009515	Eomesodermin.	T-box transcription factor 19.	0.542
EOMES	TBXT	ENSUAMP00000036778	ENSUAMP00000029000	Eomesodermin.	T-box transcription factor T.	0.554
TBR1	TBX19	ENSUAMP00000026057	ENSUAMP00000009515	T-box brain transcription factor 1.	T-box transcription factor 19.	0.484
TBR1	TBXT	ENSUAMP00000026057	ENSUAMP00000029000	T-box brain transcription factor 1.	T-box transcription factor T.	0.568
TBX10	TBX19	ENSUAMP00000012075	ENSUAMP00000009515	T-box transcription factor 10.	T-box transcription factor 19.	0.435
TBX10	TBXT	ENSUAMP00000012075	ENSUAMP00000029000	T-box transcription factor 10.	T-box transcription factor T.	0.435
TBX19	EOMES	ENSUAMP00000009515	ENSUAMP00000036778	T-box transcription factor 19.	Eomesodermin.	0.542
TBX19	TBR1	ENSUAMP00000009515	ENSUAMP00000026057	T-box transcription factor 19.	T-box brain transcription factor 1.	0.484
TBX19	TBX10	ENSUAMP00000009515	ENSUAMP00000012075	T-box transcription factor 19.	T-box transcription factor 10.	0.435
TBX19	TBX6	ENSUAMP00000009515	ENSUAMP00000031509	T-box transcription factor 19.	T-box transcription factor 6.	0.426
TBX6	TBX19	ENSUAMP00000031509	ENSUAMP00000009515	T-box transcription factor 6.	T-box transcription factor 19.	0.426
TBX6	TBXT	ENSUAMP00000031509	ENSUAMP00000029000	T-box transcription factor 6.	T-box transcription factor T.	0.412
TBXT	EOMES	ENSUAMP00000029000	ENSUAMP00000036778	T-box transcription factor T.	Eomesodermin.	0.554
TBXT	TBR1	ENSUAMP00000029000	ENSUAMP00000026057	T-box transcription factor T.	T-box brain transcription factor 1.	0.568
TBXT	TBX10	ENSUAMP00000029000	ENSUAMP00000012075	T-box transcription factor T.	T-box transcription factor 10.	0.435
TBXT	TBX6	ENSUAMP00000029000	ENSUAMP00000031509	T-box transcription factor T.	T-box transcription factor 6.	0.412