(12 nodes) Mixed, incl. RNA helicase, DEAD-box type, Q motif, and Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site network (Ailuropoda melanoleuca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RRP12	Ribosomal RNA processing 12 homolog. (1298 aa)
	DDX31	RNA helicase. (726 aa)
	RBM28	RNA binding motif protein 28. (820 aa)
	RBM19	RNA binding motif protein 19. (959 aa)
	DDX54	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (880 aa)
	RBM34	Uncharacterized protein. (428 aa)
	PUM3	Pumilio RNA binding family member 3. (647 aa)
	NSUN6	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (469 aa)
	DDX27	DEAD-box helicase 27; Belongs to the DEAD box helicase family. (780 aa)
	DDX24	DEAD-box helicase 24. (853 aa)
	CEBPZ	CCAAT enhancer binding protein zeta. (1064 aa)
	DDX56	DEAD-box helicase 56. (545 aa)

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX24	ENSAMEP00000018581	ENSAMEP00000016734	CCAAT enhancer binding protein zeta.	DEAD-box helicase 24.	0.913
CEBPZ	DDX27	ENSAMEP00000018581	ENSAMEP00000014403	CCAAT enhancer binding protein zeta.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.909
CEBPZ	DDX31	ENSAMEP00000018581	ENSAMEP00000004367	CCAAT enhancer binding protein zeta.	RNA helicase.	0.792
CEBPZ	DDX54	ENSAMEP00000018581	ENSAMEP00000009258	CCAAT enhancer binding protein zeta.	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.759
CEBPZ	DDX56	ENSAMEP00000018581	ENSAMEP00000018715	CCAAT enhancer binding protein zeta.	DEAD-box helicase 56.	0.968
CEBPZ	NSUN6	ENSAMEP00000018581	ENSAMEP00000013650	CCAAT enhancer binding protein zeta.	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.921
CEBPZ	PUM3	ENSAMEP00000018581	ENSAMEP00000012864	CCAAT enhancer binding protein zeta.	Pumilio RNA binding family member 3.	0.929
CEBPZ	RBM19	ENSAMEP00000018581	ENSAMEP00000009034	CCAAT enhancer binding protein zeta.	RNA binding motif protein 19.	0.898
CEBPZ	RBM28	ENSAMEP00000018581	ENSAMEP00000005077	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.970
CEBPZ	RBM34	ENSAMEP00000018581	ENSAMEP00000009292	CCAAT enhancer binding protein zeta.	Uncharacterized protein.	0.944
CEBPZ	RRP12	ENSAMEP00000018581	ENSAMEP00000000154	CCAAT enhancer binding protein zeta.	Ribosomal RNA processing 12 homolog.	0.950
DDX24	CEBPZ	ENSAMEP00000016734	ENSAMEP00000018581	DEAD-box helicase 24.	CCAAT enhancer binding protein zeta.	0.913
DDX24	DDX27	ENSAMEP00000016734	ENSAMEP00000014403	DEAD-box helicase 24.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.775
DDX24	DDX31	ENSAMEP00000016734	ENSAMEP00000004367	DEAD-box helicase 24.	RNA helicase.	0.871
DDX24	DDX54	ENSAMEP00000016734	ENSAMEP00000009258	DEAD-box helicase 24.	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.907
DDX24	DDX56	ENSAMEP00000016734	ENSAMEP00000018715	DEAD-box helicase 24.	DEAD-box helicase 56.	0.946
DDX24	NSUN6	ENSAMEP00000016734	ENSAMEP00000013650	DEAD-box helicase 24.	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.817
DDX24	PUM3	ENSAMEP00000016734	ENSAMEP00000012864	DEAD-box helicase 24.	Pumilio RNA binding family member 3.	0.922
DDX24	RBM19	ENSAMEP00000016734	ENSAMEP00000009034	DEAD-box helicase 24.	RNA binding motif protein 19.	0.858
DDX24	RBM28	ENSAMEP00000016734	ENSAMEP00000005077	DEAD-box helicase 24.	RNA binding motif protein 28.	0.952