STRINGSTRING
TDRD3 TDRD3 BRCA1 BRCA1 TOPBP1 TOPBP1 G1L0X7_AILME G1L0X7_AILME RAD9A RAD9A ATRIP ATRIP WRN WRN FBH1 FBH1 FANCM FANCM RAD1 RAD1 RNF168 RNF168 BARD1 BARD1 RAD52 RAD52 HUS1 HUS1 TOP3A TOP3A RHNO1 RHNO1 RAD54B RAD54B HUS1B HUS1B TOP3B TOP3B MRE11 MRE11 RPA1 RPA1 SLF1 SLF1 MEIOB MEIOB CHEK2 CHEK2 BRIP1 BRIP1 BRCA2 BRCA2 DMC1 DMC1 HLTF HLTF RPA2 RPA2 RAD18 RAD18 ATR ATR MDC1 MDC1 XRCC2 XRCC2 RBBP8 RBBP8 BLM BLM RAD9B RAD9B RAD54L RAD54L PALB2 PALB2 RAD51B RAD51B PANDA_005237 PANDA_005237 RAD51D RAD51D G1M863_AILME G1M863_AILME NBN NBN TP53BP1 TP53BP1 RPA3 RPA3 ZRANB3 ZRANB3 ATM ATM RAD51 RAD51 G1MF02_AILME G1MF02_AILME RAD50 RAD50 UBE2B UBE2B XRCC3 XRCC3 PANDA_012579 PANDA_012579 RMI1 RMI1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TDRD3Tudor domain containing 3. (746 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1867 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1518 aa)
G1L0X7_AILMEUncharacterized protein. (1218 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (394 aa)
ATRIPATR interacting protein. (786 aa)
WRN3'-5' exonuclease domain-containing protein. (268 aa)
FBH1F-box DNA helicase 1. (1048 aa)
FANCMFA complementation group M. (2048 aa)
RAD1RAD1 checkpoint DNA exonuclease. (282 aa)
RNF168Ring finger protein 168. (569 aa)
BARD1BRCA1 associated RING domain 1. (736 aa)
RAD52RAD52 homolog, DNA repair protein. (423 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (268 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (959 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (241 aa)
RAD54BUncharacterized protein. (911 aa)
HUS1BCheckpoint protein; Belongs to the HUS1 family. (272 aa)
TOP3BDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (862 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (712 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (619 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1060 aa)
MEIOBMeiosis specific with OB-fold. (472 aa)
CHEK2Checkpoint kinase 2. (545 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (1250 aa)
BRCA2BRCA2 DNA repair associated. (3460 aa)
DMC1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (342 aa)
HLTFHelicase like transcription factor. (1010 aa)
RPA2Replication protein A2. (231 aa)
RAD18RAD18 E3 ubiquitin protein ligase. (569 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2644 aa)
MDC1Mediator of DNA damage checkpoint 1. (1952 aa)
XRCC2X-ray repair cross complementing 2. (279 aa)
RBBP8RB binding protein 8, endonuclease. (903 aa)
BLMBLM RecQ like helicase. (1412 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (421 aa)
RAD54LRAD54 like. (747 aa)
PALB2Partner and localizer of BRCA2. (1179 aa)
RAD51BRAD51 paralog B. (253 aa)
PANDA_005237Rad51 domain-containing protein. (59 aa)
RAD51DRAD51 paralog D. (303 aa)
G1M863_AILMEUncharacterized protein. (85 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (769 aa)
TP53BP1Tumor protein p53 binding protein 1. (1978 aa)
RPA3Replication protein A3. (121 aa)
ZRANB3Zinc finger RANBP2-type containing 3. (1019 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3058 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (264 aa)
G1MF02_AILMEUncharacterized protein. (75 aa)
RAD50Zinc-hook domain-containing protein. (1312 aa)
UBE2BUbiquitin conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (349 aa)
PANDA_012579BRCT domain-containing protein. (79 aa)
RMI1RecQ mediated genome instability 1. (627 aa)
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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