STRINGSTRING
SMG8 SMG8 UPF1 UPF1 PARN PARN SMG1 SMG1 MAGOH MAGOH MAGOHB MAGOHB DHX34 DHX34 DCP1A DCP1A CASC3 CASC3 SMG6 SMG6 CTIF CTIF NCBP1 NCBP1 UPF2 UPF2 UPF3A UPF3A SMG9 SMG9 DCP1B DCP1B PYM1 PYM1 SMG7 SMG7 SKIV2L SKIV2L HELZ2 HELZ2 PABPC1 PABPC1 DCP2 DCP2 EIF3E EIF3E SMG5 SMG5 EIF4A3 EIF4A3 UPF3B UPF3B ETF1 ETF1 RBM8A RBM8A NCBP2L NCBP2L PNRC2 PNRC2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMG8SMG8 nonsense mediated mRNA decay factor. (991 aa)
UPF1UPF1 RNA helicase and ATPase. (1125 aa)
PARNPoly(A)-specific ribonuclease. (639 aa)
SMG1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3656 aa)
MAGOHMago homolog, exon junction complex subunit. (147 aa)
MAGOHBMago homolog B, exon junction complex subunit. (149 aa)
DHX34DExH-box helicase 34. (1136 aa)
DCP1ADecapping mRNA 1A. (579 aa)
CASC3CASC3 exon junction complex subunit. (702 aa)
SMG6SMG6 nonsense mediated mRNA decay factor. (1414 aa)
CTIFCap binding complex dependent translation initiation factor. (634 aa)
NCBP1Nuclear cap binding protein subunit 1. (792 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1271 aa)
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (455 aa)
SMG9SMG9 nonsense mediated mRNA decay factor. (520 aa)
DCP1BDecapping mRNA 1B. (614 aa)
PYM1PYM homolog 1, exon junction complex associated factor. (202 aa)
SMG7SMG7 nonsense mediated mRNA decay factor. (1144 aa)
SKIV2LSki2 like RNA helicase. (1245 aa)
HELZ2Helicase with zinc finger 2. (2932 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
DCP2Decapping mRNA 2. (427 aa)
EIF3EEukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF- 2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribos [...] (445 aa)
SMG5SMG5 nonsense mediated mRNA decay factor. (993 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (405 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (483 aa)
ETF1Eukaryotic translation termination factor 1. (436 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
NCBP2LNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (154 aa)
PNRC2Proline rich nuclear receptor coactivator 2. (139 aa)
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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