STRINGSTRING
SMC6 SMC6 RAD51AP2 RAD51AP2 MMS22L MMS22L FANCM FANCM FBH1 FBH1 RAD21 RAD21 MCM4 MCM4 MCM5 MCM5 RFWD3 RFWD3 WDR48 WDR48 SFPQ SFPQ CDC7 CDC7 NSMCE2 NSMCE2 ZSWIM7 ZSWIM7 BRCA1 BRCA1 G1L053_AILME G1L053_AILME PANDA_016575 PANDA_016575 SPIDR SPIDR HUS1 HUS1 TOP3A TOP3A HELQ HELQ RECQL4 RECQL4 TONSL TONSL RAD54B RAD54B MCM6 MCM6 FANCB FANCB AP5Z1 AP5Z1 INIP INIP SMC5 SMC5 G1LL87_AILME G1LL87_AILME HUS1B HUS1B MRE11 MRE11 RPA1 RPA1 MBTD1 MBTD1 MEIOB MEIOB MCM3 MCM3 BRCA2 BRCA2 RECQL5 RECQL5 AUNIP AUNIP EPC1 EPC1 SEM1 SEM1 ANKLE1 ANKLE1 SWSAP1 SWSAP1 MCM8 MCM8 DMC1 DMC1 SLX4 SLX4 AP5S1 AP5S1 MCM7 MCM7 ERCC4 ERCC4 REV3L REV3L CDC45 CDC45 INTS3 INTS3 NIPBL NIPBL PSMD14 PSMD14 SAMHD1 SAMHD1 MCMDC2 MCMDC2 NUCKS1 NUCKS1 XRCC2 XRCC2 RBBP8 RBBP8 BLM BLM RAD54L RAD54L CCDC155 CCDC155 NABP1 NABP1 PALB2 PALB2 POLN POLN ZFYVE26 ZFYVE26 RAD51B RAD51B PANDA_005237 PANDA_005237 RAD51D RAD51D G1M863_AILME G1M863_AILME MCM2 MCM2 NBN NBN PPP4C PPP4C SWI5 SWI5 NSMCE1 NSMCE1 RAD52 RAD52 XRCC1 XRCC1 SLX1 SLX1 FAN1 FAN1 RAD51AP1 RAD51AP1 RMI1 RMI1 GINS2 GINS2 XRCC3 XRCC3 SFR1 SFR1 POLL POLL KAT5 KAT5 MUS81 MUS81 G1MF02_AILME G1MF02_AILME RAD51 RAD51 RECQL RECQL REC8 REC8 RPA3 RPA3 ATM ATM INO80 INO80 TM4SF19 TM4SF19 NABP2 NABP2 MCM9 MCM9 GINS4 GINS4 GEN1 GEN1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SMC6Uncharacterized protein. (1008 aa)
RAD51AP2RAD51 associated protein 2. (1146 aa)
MMS22LMMS22 like, DNA repair protein. (1244 aa)
FANCMFA complementation group M. (2048 aa)
FBH1F-box DNA helicase 1. (1048 aa)
RAD21RAD21 cohesin complex component. (631 aa)
MCM4DNA helicase; Belongs to the MCM family. (863 aa)
MCM5DNA helicase; Belongs to the MCM family. (729 aa)
RFWD3E3 ubiquitin-protein ligase RFWD3; E3 ubiquitin-protein ligase required for the repair of DNA interstrand cross-links (ICL) in response to DNA damage. Plays a key role in RPA-mediated DNA damage signaling and repair. Acts by mediating ubiquitination of the RPA complex (RPA1, RPA2 and RPA3 subunits) and RAD51 at stalled replication forks, leading to remove them from DNA damage sites and promote homologous recombination. Also mediates the ubiquitination of p53/TP53 in the late response to DNA damage, and acts as a positive regulator of p53/TP53 stability, thereby regulating the G1/S DNA [...] (790 aa)
WDR48WD repeat domain 48. (677 aa)
SFPQSplicing factor proline and glutamine rich. (440 aa)
CDC7Cell division cycle 7. (578 aa)
NSMCE2NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (247 aa)
ZSWIM7Zinc finger SWIM-type containing 7. (139 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1867 aa)
G1L053_AILMEDUF4502 domain-containing protein. (170 aa)
PANDA_016575DUF4502 domain-containing protein. (186 aa)
SPIDRDUF4503 domain-containing protein. (356 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (268 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (959 aa)
HELQHelicase, POLQ like. (1004 aa)
RECQL4RecQ like helicase 4. (1203 aa)
TONSLTonsoku like, DNA repair protein. (1370 aa)
RAD54BUncharacterized protein. (911 aa)
MCM6DNA helicase; Belongs to the MCM family. (822 aa)
FANCBFA complementation group B. (867 aa)
AP5Z1Adaptor related protein complex 5 subunit zeta 1. (794 aa)
INIPINTS3 and NABP interacting protein. (96 aa)
SMC5SMC_N domain-containing protein. (1105 aa)
G1LL87_AILMEUncharacterized protein. (215 aa)
HUS1BCheckpoint protein; Belongs to the HUS1 family. (272 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (712 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (619 aa)
MBTD1Mbt domain containing 1. (651 aa)
MEIOBMeiosis specific with OB-fold. (472 aa)
MCM3DNA helicase; Belongs to the MCM family. (845 aa)
BRCA2BRCA2 DNA repair associated. (3460 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (985 aa)
AUNIPAurora kinase A and ninein interacting protein. (355 aa)
EPC1Enhancer of polycomb homolog. (842 aa)
SEM1Uncharacterized protein. (70 aa)
ANKLE1Ankyrin repeat and LEM domain containing 1. (577 aa)
SWSAP1SWIM-type zinc finger 7 associated protein 1. (245 aa)
MCM8MCM domain-containing protein; Belongs to the MCM family. (835 aa)
DMC1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (342 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1574 aa)
AP5S1Adaptor related protein complex 5 subunit sigma 1. (201 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (913 aa)
REV3LREV3 like, DNA directed polymerase zeta catalytic subunit. (3129 aa)
CDC45Cell division cycle 45. (602 aa)
INTS3Integrator complex subunit 3. (1040 aa)
NIPBLNipped-B protein. (2812 aa)
PSMD14Proteasome 26S subunit, non-ATPase 14. (310 aa)
SAMHD1SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1. (627 aa)
MCMDC2Minichromosome maintenance domain containing 2. (681 aa)
NUCKS1Uncharacterized protein. (243 aa)
XRCC2X-ray repair cross complementing 2. (279 aa)
RBBP8RB binding protein 8, endonuclease. (903 aa)
BLMBLM RecQ like helicase. (1412 aa)
RAD54LRAD54 like. (747 aa)
CCDC155Coiled-coil domain containing 155. (565 aa)
NABP1Nucleic acid binding protein 1. (207 aa)
PALB2Partner and localizer of BRCA2. (1179 aa)
POLNDNA polymerase nu. (865 aa)
ZFYVE26Zinc finger FYVE domain-containing protein 26; Phosphatidylinositol 3-phosphate-binding protein required for the abcission step in cytokinesis: recruited to the midbody during cytokinesis and acts as a regulator of abcission. May also be required for efficient homologous recombination DNA double-strand break repair (By similarity); Belongs to the ZFYVE26 family. (2545 aa)
RAD51BRAD51 paralog B. (253 aa)
PANDA_005237Rad51 domain-containing protein. (59 aa)
RAD51DRAD51 paralog D. (303 aa)
G1M863_AILMEUncharacterized protein. (85 aa)
MCM2DNA helicase; Belongs to the MCM family. (903 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (769 aa)
PPP4CSerine/threonine-protein phosphatase. (307 aa)
SWI5Uncharacterized protein. (136 aa)
NSMCE1NSE1 homolog, SMC5-SMC6 complex component. (268 aa)
RAD52RAD52 homolog, DNA repair protein. (423 aa)
XRCC1X-ray repair cross complementing 1. (643 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (269 aa)
FAN1Fanconi-associated nuclease 1; Nuclease required for the repair of DNA interstrand cross- links (ICL) recruited at sites of DNA damage by monoubiquitinated FANCD2. Specifically involved in repair of ICL-induced DNA breaks by being required for efficient homologous recombination, probably in the resolution of homologous recombination intermediates. Not involved in DNA double-strand breaks resection. Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Pro [...] (1026 aa)
RAD51AP1RAD51 associated protein 1. (356 aa)
RMI1RecQ mediated genome instability 1. (627 aa)
GINS2GINS complex subunit 2. (185 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (349 aa)
SFR1SWI5 dependent homologous recombination repair protein 1. (271 aa)
POLLDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (575 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (546 aa)
MUS81MUS81 structure-specific endonuclease subunit. (552 aa)
G1MF02_AILMEUncharacterized protein. (75 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (264 aa)
RECQLATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (646 aa)
REC8REC8 meiotic recombination protein. (589 aa)
RPA3Replication protein A3. (121 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3058 aa)
INO80INO80 complex ATPase subunit. (1561 aa)
TM4SF19Uncharacterized protein. (214 aa)
NABP2Nucleic acid binding protein 2. (211 aa)
MCM9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1141 aa)
GINS4GINS complex subunit 4. (223 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (904 aa)
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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