STRINGSTRING
LOC100476365 LOC100476365 SF3A2 SF3A2 AQR AQR RBM22 RBM22 SNW1 SNW1 PNN PNN SF3B6 SF3B6 RBMX RBMX DDX5 DDX5 G1L799_AILME G1L799_AILME SNRPD1 SNRPD1 DHX38 DHX38 SF3B3 SF3B3 SNRPF SNRPF PRPF6 PRPF6 SF3A3 SF3A3 EIF4A2 EIF4A2 SNRPD2 SNRPD2 PABPC1 PABPC1 CRNKL1 CRNKL1 PPIL1 PPIL1 MAGOH MAGOH SRRM1 SRRM1 SYF2 SYF2 LOC100474683 LOC100474683 G1LVJ8_AILME G1LVJ8_AILME CWC22 CWC22 WDR25 WDR25 CWC27 CWC27 PPWD1 PPWD1 ESS2 ESS2 SNRPB SNRPB CWC15 CWC15 CDC5L CDC5L DHX35 DHX35 WDR83 WDR83 C19orf54 C19orf54 PRPF4B PRPF4B FRG1 FRG1 SF3B1 SF3B1 MTREX MTREX SNRPD3 SNRPD3 ZCCHC8 ZCCHC8 G1M8S4_AILME G1M8S4_AILME EIF4A3 EIF4A3 ISY1 ISY1 GPATCH1 GPATCH1 SYNCRIP SYNCRIP SNRPG SNRPG CDC40 CDC40 SNRPB2 SNRPB2 BCAS2 BCAS2 SF3B2 SF3B2 SART1 SART1 RBM8A RBM8A SNRNP40 SNRNP40 SRRM2 SRRM2 DDX41 DDX41 TFIP11 TFIP11 DHX8 DHX8 EFTUD2 EFTUD2 PLRG1 PLRG1 LOC100471390 LOC100471390 G1MN57_AILME G1MN57_AILME DDX23 DDX23 SNRPA1 SNRPA1 SNRPN SNRPN SLU7 SLU7 LSM2 LSM2 BUD31 BUD31 PPIL3 PPIL3 CACTIN CACTIN LSM7 LSM7 HNRNPR HNRNPR MAGOHB MAGOHB LSM3 LSM3 HNRNPU HNRNPU SNRNP200 SNRNP200 PPIL2 PPIL2 XAB2 XAB2 RBM44 RBM44 PRPF8 PRPF8 SF3A1 SF3A1 PRPF19 PRPF19 G1LLF3_AILME G1LLF3_AILME
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100476365RRM domain-containing protein. (159 aa)
SF3A2Splicing factor 3a subunit 2. (464 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1494 aa)
RBM22RNA binding motif protein 22. (420 aa)
SNW1SNW domain containing 1. (536 aa)
PNNPinin, desmosome associated protein. (759 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
RBMXRNA binding motif protein X-linked. (391 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (671 aa)
G1L799_AILMEUncharacterized protein. (241 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (117 aa)
DHX38DEAH-box helicase 38. (1231 aa)
SF3B3Splicing factor 3b subunit 3. (1220 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
PRPF6Pre-mRNA processing factor 6. (950 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (408 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (117 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (828 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
MAGOHMago homolog, exon junction complex subunit. (147 aa)
SRRM1Serine and arginine repetitive matrix 1. (913 aa)
SYF2Uncharacterized protein. (243 aa)
LOC100474683Uncharacterized protein. (195 aa)
G1LVJ8_AILMERRM domain-containing protein. (72 aa)
CWC22CWC22 spliceosome associated protein homolog. (907 aa)
WDR25WD repeat domain 25. (560 aa)
CWC27CWC27 spliceosome associated cyclophilin. (470 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (646 aa)
ESS2Ess-2 splicing factor homolog. (479 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (282 aa)
CWC15CWC15 spliceosome associated protein homolog. (231 aa)
CDC5LCell division cycle 5 like. (803 aa)
DHX35DEAH-box helicase 35. (703 aa)
WDR83WD repeat domain 83. (314 aa)
C19orf54Chromosome 19 open reading frame 54. (303 aa)
PRPF4BPre-mRNA processing factor 4B. (1012 aa)
FRG1FSHD region gene 1. (258 aa)
SF3B1Splicing factor 3b subunit 1. (1305 aa)
MTREXMtr4 exosome RNA helicase. (1043 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
ZCCHC8Zinc finger CCHC-type containing 8. (712 aa)
G1M8S4_AILMEUncharacterized protein. (370 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (405 aa)
ISY1Uncharacterized protein. (330 aa)
GPATCH1G-patch domain containing 1. (932 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (634 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (96 aa)
CDC40Cell division cycle 40. (447 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
BCAS2BCAS2 pre-mRNA processing factor. (226 aa)
SF3B2Splicing factor 3b subunit 2. (897 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (696 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (341 aa)
SRRM2Serine/arginine repetitive matrix 2. (2727 aa)
DDX41DEAD-box helicase 41. (622 aa)
TFIP11Tuftelin interacting protein 11. (837 aa)
DHX8DEAH-box helicase 8. (1228 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
PLRG1Pleiotropic regulator 1. (522 aa)
LOC100471390Sm domain-containing protein. (86 aa)
G1MN57_AILMEPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
DDX23DEAD-box helicase 23. (820 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (152 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (244 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
BUD31BUD31 homolog. (144 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
CACTINCactin, spliceosome C complex subunit. (756 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (637 aa)
MAGOHBMago homolog B, exon junction complex subunit. (149 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (821 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
PPIL2Peptidylprolyl isomerase like 2. (555 aa)
XAB2XPA binding protein 2. (843 aa)
RBM44RNA binding motif protein 44. (1056 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
SF3A1Uncharacterized protein. (795 aa)
PRPF19Pre-mRNA processing factor 19. (505 aa)
G1LLF3_AILMEUncharacterized protein. (175 aa)
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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