(30 nodes) RNA helicase, DEAD-box type, Q motif network (Ailuropoda melanoleuca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DDX6	DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
	DDX3X	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family. (675 aa)
	DDX25	DEAD-box helicase 25. (484 aa)
	DDX23	DEAD-box helicase 23. (820 aa)
	DDX43	Uncharacterized protein; Belongs to the DEAD box helicase family. (650 aa)
	DDX54	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (880 aa)
	DDX10	RNA helicase. (870 aa)
	EIF4A2	Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (408 aa)
	DDX1	DEAD-box helicase 1. (740 aa)
	DDX19A	DEAD-box helicase 19A. (476 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (671 aa)
	DDX42	DEAD-box helicase 42. (935 aa)
	DDX31	RNA helicase. (726 aa)
	DDX17	DEAD-box helicase 17; Belongs to the DEAD box helicase family. (731 aa)
	DDX47	DEAD-box helicase 47; Belongs to the DEAD box helicase family. (455 aa)
	DDX49	DEAD-box helicase 49; Belongs to the DEAD box helicase family. (483 aa)
	DDX59	DEAD-box helicase 59. (620 aa)
	DDX52	DExD-box helicase 52. (598 aa)
	DDX53	Uncharacterized protein; Belongs to the DEAD box helicase family. (610 aa)
	DDX28	DEAD-box helicase 28. (532 aa)
	DDX41	DEAD-box helicase 41. (622 aa)
	DDX56	DEAD-box helicase 56. (545 aa)
	EIF4A1	Eukaryotic translation initiation factor 4A1; Belongs to the DEAD box helicase family. (406 aa)
	DDX24	DEAD-box helicase 24. (853 aa)
	DDX55	RNA helicase. (600 aa)
	EIF4A3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (405 aa)
	DDX4	DEAD-box helicase 4; Belongs to the DEAD box helicase family. (729 aa)
	DDX39A	DExD-box helicase 39A. (435 aa)
	DDX27	DEAD-box helicase 27; Belongs to the DEAD box helicase family. (780 aa)
	G1LE09_AILME	Uncharacterized protein. (204 aa)

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX1	DDX5	ENSAMEP00000001179	ENSAMEP00000002855	DEAD-box helicase 1.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.526
DDX1	DDX56	ENSAMEP00000001179	ENSAMEP00000018715	DEAD-box helicase 1.	DEAD-box helicase 56.	0.471
DDX10	DDX17	ENSAMEP00000009740	ENSAMEP00000011163	RNA helicase.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.532
DDX10	DDX24	ENSAMEP00000009740	ENSAMEP00000016734	RNA helicase.	DEAD-box helicase 24.	0.877
DDX10	DDX27	ENSAMEP00000009740	ENSAMEP00000014403	RNA helicase.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.871
DDX10	DDX28	ENSAMEP00000009740	ENSAMEP00000020481	RNA helicase.	DEAD-box helicase 28.	0.720
DDX10	DDX31	ENSAMEP00000009740	ENSAMEP00000004367	RNA helicase.	RNA helicase.	0.898
DDX10	DDX47	ENSAMEP00000009740	ENSAMEP00000011311	RNA helicase.	DEAD-box helicase 47; Belongs to the DEAD box helicase family.	0.792
DDX10	DDX49	ENSAMEP00000009740	ENSAMEP00000012186	RNA helicase.	DEAD-box helicase 49; Belongs to the DEAD box helicase family.	0.611
DDX10	DDX5	ENSAMEP00000009740	ENSAMEP00000002855	RNA helicase.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.530
DDX10	DDX52	ENSAMEP00000009740	ENSAMEP00000013903	RNA helicase.	DExD-box helicase 52.	0.915
DDX10	DDX54	ENSAMEP00000009740	ENSAMEP00000009258	RNA helicase.	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.913
DDX10	DDX55	ENSAMEP00000009740	ENSAMEP00000016128	RNA helicase.	RNA helicase.	0.680
DDX10	DDX56	ENSAMEP00000009740	ENSAMEP00000018715	RNA helicase.	DEAD-box helicase 56.	0.864
DDX10	DDX59	ENSAMEP00000009740	ENSAMEP00000013262	RNA helicase.	DEAD-box helicase 59.	0.483
DDX10	EIF4A3	ENSAMEP00000009740	ENSAMEP00000016011	RNA helicase.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.667
DDX10	G1LE09_AILME	ENSAMEP00000009740	ENSAMEP00000005143	RNA helicase.	Uncharacterized protein.	0.532
DDX17	DDX10	ENSAMEP00000011163	ENSAMEP00000009740	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	RNA helicase.	0.532
DDX17	DDX24	ENSAMEP00000011163	ENSAMEP00000016734	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAD-box helicase 24.	0.591
DDX17	DDX27	ENSAMEP00000011163	ENSAMEP00000014403	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.631